Fitness for 5 genes in Rahnella sp. WP5

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500 ntEX31_RS15150 and EX31_RS25380 are separated by 158 nucleotidesEX31_RS25380 and EX31_RS15155 are separated by 96 nucleotidesEX31_RS15155 and EX31_RS15160 overlap by 4 nucleotidesEX31_RS15160 and EX31_RS15165 overlap by 4 nucleotides EX31_RS15150: EX31_RS15150 - class I adenylate cyclase, at 45,306 to 47,864 _RS15150 EX31_RS25380: EX31_RS25380 - hypothetical protein, at 48,023 to 48,226 _RS25380 EX31_RS15155: EX31_RS15155 - diaminopimelate epimerase, at 48,323 to 49,147 _RS15155 EX31_RS15160: EX31_RS15160 - DUF484 domain-containing protein, at 49,144 to 49,848 _RS15160 EX31_RS15165: EX31_RS15165 - tyrosine recombinase XerC, at 49,845 to 50,756 _RS15165
Group Condition EX31_RS15150 EX31_RS25380 EX31_RS15155 EX31_RS15160 EX31_RS15165
nitrogen source Ammonium chloride (N); RCH2 media; no shaking -0.5 -0.4 -3.5 -0.5 -1.0
nitrogen source L-Glutamine (N); ShewMM media; no shaking -0.4 -0.5 -2.5 -0.6 -1.1
nitrogen source L-Glutamine (N); RCH2 media; no shaking -0.0 +0.1 -3.5 -0.7 -0.9
nitrogen source L-Glutamine (N); RCH2 media; no shaking +0.1 +0.1 -3.4 -0.5 -0.8
carbon source D,L-Lactate (C) -0.5 -0.1 -1.4 -1.7 -0.9
nitrogen source L-Glutamine (N); RCH2 media; shaking +0.0 +0.1 -3.3 -0.3 -0.7
mgl MGL -0.3 +0.3 -0.8 -0.6 -2.9
nitrogen source Ammonium chloride (N); ShewMM media; no shaking +0.1 -0.4 -2.5 -0.2 -1.0
nitrogen source L-Glutamine (N); ShewMM media; no shaking -0.4 -0.1 -2.2 -0.3 -1.0
mgl MGL -0.5 +0.2 -1.4 -0.0 -2.1
nf_with_fulln NF_with_fullN +0.2 +0.3 -1.7 -0.3 -2.1
mgl MGL -0.3 +0.1 -1.3 -0.2 -1.7
nitrogen source L-Glutamine (N); RCH2 media; no shaking -0.2 -0.4 -2.0 +0.0 -0.8
mgl MGL +0.0 -0.1 -1.3 -0.3 -1.6
nitrogen source L-Glutamine (N); ShewMM media; no shaking -0.5 -0.1 -0.8 -0.6 -1.2
carbon source D-Xylose (C) -2.5 -0.5 -0.2 -0.1 +0.3
nitrogen source Ammonium chloride (N); RCH2 media; shaking +0.2 -0.3 -2.2 -0.5 -0.1
carbon source casaminos (C) -1.8 -0.2 -0.7 +0.2 -0.3
carbon source D-Glucose (C) +0.0 -0.4 -2.2 -0.4 +0.4
mgl MGL -0.6 +0.3 -0.6 +0.0 -1.7
nf_with_fulln NF_with_fullN +0.5 +0.5 -1.3 -0.3 -1.9
nf_with_fulln NF_with_fullN +0.4 +0.6 -1.1 -0.3 -1.9
nitrogen source L-Serine (N); ShewMM media; no shaking -0.3 +0.2 -1.9 -0.7 +0.4
nitrogen source Ammonium chloride (N); ShewMM media; shaking +0.5 -0.2 -1.5 -0.4 -0.5
nitrogen source L-Glutamine (N); ShewMM media; shaking +0.6 -0.2 -2.2 -0.0 -0.1
nf_with_fulln NF_with_fullN +0.4 +0.5 -0.4 -0.4 -2.1
nf_with_fulln NF_with_fullN +0.4 +0.6 -0.7 -0.3 -2.0
carbon source D-Xylose (C) -2.2 -0.0 +0.2 -0.2 +0.5
carbon source NLDM_metabolites (C) -0.4 -0.1 -2.1 +0.3 +0.7
nf_with_fulln NF_with_fullN +0.5 +0.6 -0.4 -0.1 -1.4
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