Fitness for 5 genes in Rahnella sp. WP5

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500 ntEX31_RS15085 and EX31_RS15090 overlap by 4 nucleotidesEX31_RS15090 and EX31_RS15095 overlap by 4 nucleotidesEX31_RS15095 and EX31_RS15100 overlap by 17 nucleotidesEX31_RS15100 and EX31_RS15105 are separated by 241 nucleotides EX31_RS15085: EX31_RS15085 - lipid III flippase WzxE, at 33,658 to 34,908 _RS15085 EX31_RS15090: EX31_RS15090 - TDP-N-acetylfucosamine:lipid II N-acetylfucosaminyltransferase, at 34,905 to 35,987 _RS15090 EX31_RS15095: EX31_RS15095 - O-antigen assembly polymerase, at 35,984 to 37,363 _RS15095 EX31_RS15100: EX31_RS15100 - lipopolysaccharide N-acetylmannosaminouronosyltransferase, at 37,347 to 38,087 _RS15100 EX31_RS15105: EX31_RS15105 - amino acid permease, at 38,329 to 39,723 _RS15105
Group Condition EX31_RS15085 EX31_RS15090 EX31_RS15095 EX31_RS15100 EX31_RS15105
nf_with_fulln NF_with_fullN -2.2 +0.0 -5.8 +0.3 +0.1
nf_with_fulln NF_with_fullN -3.5 +0.1 -2.9 +0.3 +0.2
nf_with_fulln NF_with_fullN -2.4 +0.0 -3.8 +0.2 +0.1
nl-ccm; low oxygen NL-CCM; low oxygen -2.2 -0.0 -3.0 +0.0 -0.0
nf_with_fulln NF_with_fullN -1.9 +0.2 -3.5 +0.4 +0.1
nl-ccm; low oxygen NL-CCM; low oxygen -1.3 -0.2 -3.1 -0.0 -0.0
nl-ccm; ambient oxygen NL-CCM; ambient oxygen -3.6 -0.1 -0.9 +0.2 -0.2
nf_with10percent_fulln NF_with10percent_fullN -2.4 -0.1 -2.2 +0.2 +0.0
nf_with_fulln NF_with_fullN -2.4 +0.1 -2.7 +0.4 +0.2
nf_with10percent_fulln NF_with10percent_fullN -1.9 +0.0 -2.5 +0.1 +0.0
nl-ccm; high oxygen NL-CCM; high oxygen -2.7 -0.1 -1.5 +0.1 -0.1
nf_with_fulln NF_with_fullN -2.3 +0.0 -2.3 +0.2 +0.2
nl-ccm; low oxygen NL-CCM; low oxygen -1.9 -0.2 -1.9 +0.0 -0.0
nf_with10percent_fulln NF_with10percent_fullN -2.0 -0.1 -2.1 +0.2 +0.0
nl-ccm; ambient oxygen NL-CCM; ambient oxygen -2.0 -0.1 -1.8 +0.1 -0.1
nl-ccm; low oxygen NL-CCM; low oxygen -1.4 -0.1 -2.2 -0.1 +0.0
nl-ccm; low oxygen NL-CCM; low oxygen -1.5 -0.2 -2.1 +0.0 -0.0
nf_with10percent_fulln NF_with10percent_fullN -1.7 -0.1 -2.2 +0.2 +0.0
nf_with10percent_fulln NF_with10percent_fullN -1.9 -0.0 -2.0 +0.2 +0.0
nl-ccm; high oxygen NL-CCM; high oxygen -1.8 -0.1 -1.7 -0.0 -0.0
nl-ccm; high oxygen NL-CCM; high oxygen -1.4 -0.3 -1.9 +0.1 -0.1
nl-ccm; low oxygen NL-CCM; low oxygen -1.4 -0.0 -2.1 +0.0 +0.0
nf_with10percent_fulln NF_with10percent_fullN -2.2 -0.1 -1.3 +0.2 +0.0
mgl MGL -1.8 +0.2 -1.3 +0.3 +0.0
nln NLN -1.9 +0.1 -1.2 +0.4 +0.0
carbon source D,L-Lactate (C) +0.9 +0.1 +2.5 -0.3 +0.0
carbon source NLDM_metabolites (C) +1.9 +0.2 +1.5 -0.1 -0.1
nitrogen source L-Glutamine (N); ShewMM media; shaking +0.9 -0.1 +2.8 +0.0 +0.0
carbon source D-Mannitol (C) +1.2 +0.1 +2.4 -0.2 +0.2
carbon source D,L-Lactate (C) +1.6 +0.4 +3.3 +0.2 +0.1
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EX31_RS15085
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EX31_RS15090
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EX31_RS15100
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EX31_RS15105
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