Fitness for 5 genes in Rahnella sp. WP5

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500 ntEX31_RS14885 and EX31_RS14890 are separated by 267 nucleotidesEX31_RS14890 and EX31_RS14895 are separated by 3 nucleotidesEX31_RS14895 and EX31_RS14900 overlap by 4 nucleotidesEX31_RS14900 and EX31_RS14905 are separated by 12 nucleotides EX31_RS14885: EX31_RS14885 - LacI family DNA-binding transcriptional regulator, at 70,077 to 71,111 _RS14885 EX31_RS14890: EX31_RS14890 - carbohydrate ABC transporter substrate-binding protein, at 71,379 to 72,641 _RS14890 EX31_RS14895: EX31_RS14895 - sugar ABC transporter permease, at 72,645 to 73,514 _RS14895 EX31_RS14900: EX31_RS14900 - carbohydrate ABC transporter permease, at 73,511 to 74,392 _RS14900 EX31_RS14905: EX31_RS14905 - DUF3459 domain-containing protein, at 74,405 to 75,955 _RS14905
Group Condition EX31_RS14885 EX31_RS14890 EX31_RS14895 EX31_RS14900 EX31_RS14905
nl-ccm; ambient oxygen NL-CCM; ambient oxygen -0.4 -0.1 -0.2 -0.2 -0.1
mixed community NL-CCM; Mixed culture; Sphingobium sp. WW5 2:1 starting OD to Azospirillum -0.3 -0.0 -0.3 -0.3 +0.1
nf_with10percent_fulln NF_with10percent_fullN -0.4 -0.1 -0.2 -0.2 -0.0
nf_with10percent_fulln NF_with10percent_fullN -0.3 -0.1 -0.2 -0.2 -0.0
nl-ccm; ambient oxygen NL-CCM; ambient oxygen -0.2 -0.2 -0.2 -0.2 -0.1
nl-ccm; high oxygen NL-CCM; high oxygen -0.3 -0.1 -0.2 -0.3 +0.1
mixed community NL-CCM; Mixed culture; Sphingobium sp. HT1-2 2:1 starting OD to Azospirillum -0.2 -0.1 -0.1 -0.3 -0.1
nl-ccm; ambient oxygen NL-CCM; ambient oxygen -0.3 -0.1 -0.1 -0.2 -0.1
nl-ccm; ambient oxygen NL-CCM; ambient oxygen -0.3 -0.1 -0.2 -0.1 -0.1
nl-ccm; high oxygen NL-CCM; high oxygen -0.4 -0.2 -0.1 -0.2 +0.0
nln NLN -0.1 -0.1 -0.2 -0.3 -0.0
nl-ccm; high oxygen NL-CCM; high oxygen -0.3 -0.1 -0.2 -0.0 -0.1
nf_with10percent_fulln NF_with10percent_fullN -0.4 -0.0 +0.0 -0.2 -0.1
mixed community NL-CCM; Mixed culture; Sphingobium sp. HT1-2 2:1 starting OD to Azospirillum -0.1 -0.0 -0.2 -0.3 -0.1
mixed community NL-CCM; Mixed culture; Sphingobium sp. HT1-2 2:1 starting OD to Azospirillum -0.2 -0.0 -0.3 -0.1 -0.1
nl-ccm; high oxygen NL-CCM; high oxygen -0.2 -0.1 -0.2 -0.1 -0.1
nl-ccm; ambient oxygen NL-CCM; ambient oxygen -0.3 -0.1 -0.1 -0.2 -0.0
nl-ccm NL-CCM +0.0 -0.1 -0.4 -0.2 +0.0
nl-ccm; high oxygen NL-CCM; high oxygen -0.3 -0.0 -0.1 -0.1 -0.1
mixed community NL-CCM; Mixed culture; Herbiconiux sp. 11RBC 2:1 starting OD to Azospirillum -0.2 -0.1 -0.3 -0.0 -0.1
nf_with10percent_fulln NF_with10percent_fullN -0.3 -0.1 -0.2 -0.1 +0.1
nf_with_fulln NF_with_fullN -0.3 -0.1 -0.2 -0.1 -0.0
nl-ccm; low oxygen NL-CCM; low oxygen -0.3 -0.0 -0.2 -0.1 +0.0
nl-ccm; ambient oxygen NL-CCM; ambient oxygen -0.3 -0.1 -0.1 -0.1 +0.0
carbon source NLDM_metabolites (C) -0.3 +0.0 +0.0 -0.3 +0.1
carbon source Sucrose (C) -0.1 +0.0 -0.2 -0.3 +0.1
nitrogen source L-Serine (N); ShewMM media; no shaking +0.2 -0.0 -0.2 -0.3 +0.0
nitrogen source Ammonium chloride (N); RCH2 media; shaking +0.3 +0.0 -0.2 -0.1 +0.0
nitrogen source L-Serine (N); RCH2 media; no shaking +0.1 +0.0 +0.3 -0.3 -0.0
nitrogen source L-Glutamine (N); ShewMM media; shaking +0.4 +0.0 +0.1 -0.0 +0.1
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EX31_RS14885
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EX31_RS14890
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EX31_RS14900
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EX31_RS14905
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