Fitness for 5 genes in Rahnella sp. WP5

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500 ntEX31_RS14875 and EX31_RS14880 are separated by 32 nucleotidesEX31_RS14880 and EX31_RS14885 are separated by 54 nucleotidesEX31_RS14885 and EX31_RS14890 are separated by 267 nucleotidesEX31_RS14890 and EX31_RS14895 are separated by 3 nucleotides EX31_RS14875: EX31_RS14875 - sn-glycerol-3-phosphate ABC transporter ATP-binding protein UgpC, at 67,549 to 68,625 _RS14875 EX31_RS14880: EX31_RS14880 - phosphomannomutase/phosphoglucomutase, at 68,658 to 70,022 _RS14880 EX31_RS14885: EX31_RS14885 - LacI family DNA-binding transcriptional regulator, at 70,077 to 71,111 _RS14885 EX31_RS14890: EX31_RS14890 - carbohydrate ABC transporter substrate-binding protein, at 71,379 to 72,641 _RS14890 EX31_RS14895: EX31_RS14895 - sugar ABC transporter permease, at 72,645 to 73,514 _RS14895
Group Condition EX31_RS14875 EX31_RS14880 EX31_RS14885 EX31_RS14890 EX31_RS14895
mixed community NL-CCM; Mixed culture; Sphingobium sp. WW5 2:1 starting OD to Azospirillum -0.1 +0.0 -0.3 -0.0 -0.3
nl-ccm; ambient oxygen NL-CCM; ambient oxygen -0.0 +0.0 -0.4 -0.1 -0.2
mixed community NL-CCM; Mixed culture; Herbiconiux sp. 11RBC 2:1 starting OD to Azospirillum -0.1 -0.0 -0.2 -0.1 -0.3
nf_with10percent_fulln NF_with10percent_fullN -0.0 +0.0 -0.3 -0.1 -0.2
nl-ccm; high oxygen NL-CCM; high oxygen -0.0 -0.0 -0.3 -0.1 -0.2
nl-ccm; ambient oxygen NL-CCM; ambient oxygen +0.1 -0.1 -0.2 -0.2 -0.2
nl-ccm; high oxygen NL-CCM; high oxygen +0.1 -0.1 -0.4 -0.2 -0.1
nf_with10percent_fulln NF_with10percent_fullN +0.1 +0.0 -0.4 -0.1 -0.2
nl-ccm; low oxygen NL-CCM; low oxygen +0.0 -0.1 -0.3 -0.0 -0.2
nl-ccm; ambient oxygen NL-CCM; ambient oxygen +0.0 -0.0 -0.3 -0.1 -0.1
nf_with10percent_fulln NF_with10percent_fullN +0.0 +0.0 -0.3 -0.1 -0.2
nl-ccm; ambient oxygen NL-CCM; ambient oxygen +0.0 +0.0 -0.3 -0.1 -0.1
nl-ccm; ambient oxygen NL-CCM; ambient oxygen +0.1 -0.0 -0.3 -0.1 -0.2
nitrogen source L-Serine (N); ShewMM media; shaking +0.0 -0.1 -0.3 -0.0 -0.2
carbon source NLDM_metabolites (C) -0.3 +0.1 -0.3 +0.0 +0.0
nf_with_fulln NF_with_fullN -0.0 +0.1 -0.3 -0.1 -0.2
nl-ccm; high oxygen NL-CCM; high oxygen +0.0 +0.0 -0.2 -0.1 -0.2
nl-ccm; high oxygen NL-CCM; high oxygen +0.1 +0.0 -0.3 -0.1 -0.2
nf_with10percent_fulln NF_with10percent_fullN +0.0 +0.0 -0.3 -0.1 -0.1
mixed community NL-CCM; Mixed culture; Sphingobium sp. HT1-2 2:1 starting OD to Azospirillum +0.1 -0.0 -0.2 -0.0 -0.3
nf_with10percent_fulln NF_with10percent_fullN -0.0 +0.1 -0.4 -0.0 +0.0
nitrogen source L-Serine (N); RCH2 media; no shaking +0.1 +0.1 -0.1 -0.0 -0.2
nitrogen source L-Glutamine (N); ShewMM media; shaking -0.2 -0.0 +0.2 -0.0 -0.1
nitrogen source L-Serine (N); RCH2 media; shaking +0.2 -0.1 -0.3 -0.0 +0.0
mixed community NL-CCM; Mixed culture; Sphingobium sp. WW5 2:1 starting OD to Azospirillum -0.1 +0.0 +0.2 -0.1 -0.1
nitrogen source L-Serine (N); ShewMM media; shaking +0.2 +0.0 -0.0 -0.1 -0.2
nitrogen source Ammonium chloride (N); ShewMM media; shaking +0.2 -0.0 +0.2 +0.0 -0.2
nitrogen source Ammonium chloride (N); RCH2 media; no shaking -0.0 +0.1 +0.2 +0.0 +0.3
nitrogen source L-Glutamine (N); ShewMM media; shaking -0.0 +0.0 +0.4 +0.0 +0.1
nitrogen source L-Serine (N); RCH2 media; no shaking +0.2 +0.1 +0.1 +0.0 +0.3
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EX31_RS14875
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EX31_RS14880
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EX31_RS14890
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EX31_RS14895
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