Fitness for 5 genes in Rahnella sp. WP5

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500 ntEX31_RS14655 and EX31_RS14660 are separated by 11 nucleotidesEX31_RS14660 and EX31_RS14665 are separated by 366 nucleotidesEX31_RS14665 and EX31_RS14670 are separated by 17 nucleotidesEX31_RS14670 and EX31_RS14675 are separated by 16 nucleotides EX31_RS14655: EX31_RS14655 - fructose-6-phosphate aldolase, at 24,629 to 25,291 _RS14655 EX31_RS14660: EX31_RS14660 - phosphoenolpyruvate--protein phosphotransferase, at 25,303 to 27,807 _RS14660 EX31_RS14665: EX31_RS14665 - PTS fructose transporter subunit EIIC, at 28,174 to 29,253 _RS14665 EX31_RS14670: EX31_RS14670 - PTS fructose-like transporter subunit IIB, at 29,271 to 29,600 _RS14670 EX31_RS14675: EX31_RS14675 - formate C-acetyltransferase, at 29,617 to 31,914 _RS14675
Group Condition EX31_RS14655 EX31_RS14660 EX31_RS14665 EX31_RS14670 EX31_RS14675
nitrogen source Ammonium chloride (N); ShewMM media; no shaking -0.1 -0.1 -0.1 +0.0 -0.1
mixed community NL-CCM; Mixed culture; Sphingobium sp. WW5 2:1 starting OD to Azospirillum -0.1 -0.2 -0.0 +0.0 +0.0
nitrogen source Ammonium chloride (N); RCH2 media; no shaking -0.1 -0.0 -0.2 +0.0 +0.0
nf_with_fulln NF_with_fullN +0.1 -0.1 -0.1 -0.0 -0.1
mixed community NL-CCM; Mixed culture; Sphingobium sp. HT1-2 2:1 starting OD to Azospirillum -0.1 -0.1 +0.0 +0.1 +0.0
nf_with_fulln NF_with_fullN +0.1 -0.1 -0.1 -0.0 -0.1
nl-ccm; high oxygen NL-CCM; high oxygen -0.1 -0.0 -0.1 +0.1 -0.1
carbon source NLDM_metabolites (C) -0.1 +0.1 -0.1 -0.0 -0.0
nitrogen source L-Serine (N); ShewMM media; no shaking +0.1 -0.1 -0.0 -0.0 -0.1
nitrogen source L-Glutamine (N); ShewMM media; no shaking +0.1 -0.0 +0.0 -0.1 -0.1
mgl MGL -0.1 -0.1 +0.1 +0.0 +0.0
nitrogen source L-Glutamine (N); RCH2 media; shaking +0.1 +0.0 -0.0 -0.1 -0.1
nitrogen source L-Glutamine (N); ShewMM media; shaking -0.1 +0.0 +0.1 -0.0 +0.0
nitrogen source L-Serine (N); RCH2 media; no shaking +0.2 +0.1 -0.2 -0.1 -0.0
nitrogen source L-Serine (N); RCH2 media; no shaking +0.1 +0.0 -0.0 -0.0 -0.1
carbon source D-Mannitol (C) +0.1 +0.0 -0.0 -0.0 -0.1
mgl MGL +0.1 -0.0 +0.1 -0.1 +0.0
nitrogen source Ammonium chloride (N); ShewMM media; no shaking +0.1 +0.1 -0.0 +0.1 -0.1
mixed community NL-CCM; Mixed culture; Herbiconiux sp. 11RBC 2:1 starting OD to Azospirillum -0.1 +0.0 -0.0 +0.1 +0.0
nitrogen source L-Serine (N); RCH2 media; no shaking +0.0 -0.1 +0.1 +0.1 +0.0
nitrogen source L-Serine (N); RCH2 media; shaking +0.2 +0.1 -0.0 +0.0 -0.1
carbon source NLDM_metabolites (C) +0.0 -0.0 +0.2 +0.0 -0.1
nitrogen source L-Glutamine (N); ShewMM media; shaking +0.1 -0.1 +0.0 +0.1 -0.0
nl-ccm; ambient oxygen NL-CCM; ambient oxygen -0.1 -0.0 +0.2 +0.1 -0.0
carbon source D-Xylose (C) +0.2 +0.1 -0.0 +0.0 -0.0
nitrogen source Ammonium chloride (N); ShewMM media; shaking +0.3 +0.0 -0.1 -0.0 +0.0
carbon source D,L-Lactate (C) +0.0 +0.2 +0.1 -0.0 -0.1
nitrogen source L-Glutamine (N); RCH2 media; no shaking +0.1 -0.0 +0.1 +0.1 -0.0
carbon source D,L-Lactate (C) -0.1 +0.3 +0.1 +0.0 -0.0
nitrogen source Ammonium chloride (N); RCH2 media; no shaking +0.2 +0.1 -0.1 +0.1 +0.0
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