Fitness for 5 genes in Rahnella sp. WP5

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500 ntEX31_RS14620 and EX31_RS14625 are separated by 13 nucleotidesEX31_RS14625 and EX31_RS14630 are separated by 141 nucleotidesEX31_RS14630 and EX31_RS14635 are separated by 157 nucleotidesEX31_RS14635 and EX31_RS14640 are separated by 165 nucleotides EX31_RS14620: EX31_RS14620 - SCP2 domain-containing protein, at 16,346 to 16,954 _RS14620 EX31_RS14625: EX31_RS14625 - bifunctional demethylmenaquinone methyltransferase/2-methoxy-6-polyprenyl-1,4-benzoquinol methylase UbiE, at 16,968 to 17,723 _RS14625 EX31_RS14630: EX31_RS14630 - DNA recombination protein RmuC, at 17,865 to 19,406 _RS14630 EX31_RS14635: EX31_RS14635 - DedA family protein, at 19,564 to 20,091 _RS14635 EX31_RS14640: EX31_RS14640 - uridine phosphorylase, at 20,257 to 21,018 _RS14640
Group Condition EX31_RS14620 EX31_RS14625 EX31_RS14630 EX31_RS14635 EX31_RS14640
nitrogen source Ammonium chloride (N); ShewMM media; no shaking -3.1 N.D. -0.1 +0.4 +0.1
nitrogen source Ammonium chloride (N); RCH2 media; no shaking -2.9 N.D. +0.1 +0.3 +0.1
nitrogen source L-Serine (N); RCH2 media; no shaking -2.6 N.D. -0.1 +0.1 +0.1
nitrogen source L-Serine (N); RCH2 media; no shaking -1.9 N.D. -0.0 -0.2 -0.2
nitrogen source Ammonium chloride (N); RCH2 media; shaking -2.4 N.D. +0.0 +0.1 -0.0
carbon source Sucrose (C) -2.1 N.D. +0.2 -0.1 -0.1
nitrogen source Ammonium chloride (N); ShewMM media; shaking -2.5 N.D. -0.1 +0.2 +0.2
nitrogen source L-Serine (N); RCH2 media; shaking -2.5 N.D. -0.0 +0.4 -0.0
mgl MGL -2.0 N.D. +0.1 -0.3 +0.1
nitrogen source Ammonium chloride (N); RCH2 media; no shaking -2.3 N.D. -0.1 +0.6 -0.1
nitrogen source L-Glutamine (N); ShewMM media; shaking -2.2 N.D. +0.1 +0.1 +0.1
nitrogen source L-Glutamine (N); ShewMM media; no shaking -2.0 N.D. -0.1 +0.1 +0.1
nitrogen source Ammonium chloride (N); RCH2 media; shaking -2.0 N.D. -0.0 +0.2 +0.1
mgl MGL -1.9 N.D. -0.1 +0.3 -0.0
carbon source D-Mannitol (C) -2.0 N.D. +0.1 +0.2 +0.0
carbon source NLDM_metabolites (C) -1.9 N.D. +0.1 +0.0 +0.1
nitrogen source L-Serine (N); ShewMM media; no shaking -1.9 N.D. -0.1 +0.2 +0.1
carbon source D,L-Lactate (C) -1.7 N.D. -0.1 +0.4 -0.2
mgl MGL -1.8 N.D. +0.0 +0.2 +0.0
carbon source casaminos (C) -1.7 N.D. +0.1 +0.1 +0.2
carbon source D-Glucose (C) -1.7 N.D. +0.1 +0.4 -0.1
nitrogen source Ammonium chloride (N); RCH2 media; no shaking -1.5 N.D. -0.0 +0.7 +0.1
carbon source D,L-Lactate (C) -1.3 N.D. +0.1 +0.6 -0.0
nln NLN +1.6 N.D. +0.2 +0.2 +0.1
nl-ccm; ambient oxygen NL-CCM; ambient oxygen +1.9 N.D. +0.0 +0.1 +0.1
nl-ccm; ambient oxygen NL-CCM; ambient oxygen +2.2 N.D. +0.1 +0.1 +0.1
nl-ccm; ambient oxygen NL-CCM; ambient oxygen +2.0 N.D. +0.0 +0.2 +0.2
nl-ccm; ambient oxygen NL-CCM; ambient oxygen +2.4 N.D. +0.0 +0.2 +0.2
nl-ccm; ambient oxygen NL-CCM; ambient oxygen +2.0 N.D. +0.1 +0.3 +0.3
nl-ccm; ambient oxygen NL-CCM; ambient oxygen +2.4 N.D. +0.1 +0.4 +0.1
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EX31_RS14620
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