Fitness for 5 genes in Rahnella sp. WP5

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500 ntEX31_RS14610 and EX31_RS14615 are separated by 73 nucleotidesEX31_RS14615 and EX31_RS14620 overlap by 4 nucleotidesEX31_RS14620 and EX31_RS14625 are separated by 13 nucleotidesEX31_RS14625 and EX31_RS14630 are separated by 141 nucleotides EX31_RS14610: EX31_RS14610 - twin-arginine translocase subunit TatE, at 14,378 to 14,644 _RS14610 EX31_RS14615: EX31_RS14615 - ubiquinone biosynthesis regulatory protein kinase UbiB, at 14,718 to 16,349 _RS14615 EX31_RS14620: EX31_RS14620 - SCP2 domain-containing protein, at 16,346 to 16,954 _RS14620 EX31_RS14625: EX31_RS14625 - bifunctional demethylmenaquinone methyltransferase/2-methoxy-6-polyprenyl-1,4-benzoquinol methylase UbiE, at 16,968 to 17,723 _RS14625 EX31_RS14630: EX31_RS14630 - DNA recombination protein RmuC, at 17,865 to 19,406 _RS14630
Group Condition EX31_RS14610 EX31_RS14615 EX31_RS14620 EX31_RS14625 EX31_RS14630
nitrogen source Ammonium chloride (N); ShewMM media; shaking -0.9 N.D. -2.5 N.D. -0.1
nitrogen source Ammonium chloride (N); ShewMM media; no shaking +0.0 N.D. -3.1 N.D. -0.1
nitrogen source Ammonium chloride (N); RCH2 media; no shaking +0.1 N.D. -2.9 N.D. +0.1
nitrogen source Ammonium chloride (N); RCH2 media; shaking -0.2 N.D. -2.4 N.D. +0.0
nitrogen source L-Serine (N); RCH2 media; shaking +0.2 N.D. -2.5 N.D. -0.0
nitrogen source L-Serine (N); RCH2 media; no shaking +0.4 N.D. -2.6 N.D. -0.1
nitrogen source Ammonium chloride (N); RCH2 media; no shaking +0.1 N.D. -2.3 N.D. -0.1
nitrogen source L-Serine (N); ShewMM media; shaking -1.0 N.D. -1.2 N.D. +0.1
nitrogen source L-Glutamine (N); ShewMM media; no shaking +0.1 N.D. -2.0 N.D. -0.1
nitrogen source L-Glutamine (N); ShewMM media; shaking +0.1 N.D. -2.2 N.D. +0.1
nitrogen source Ammonium chloride (N); RCH2 media; shaking +0.3 N.D. -2.0 N.D. -0.0
carbon source D-Mannitol (C) +0.3 N.D. -2.0 N.D. +0.1
mgl MGL +0.5 N.D. -1.9 N.D. -0.1
carbon source D,L-Lactate (C) +0.3 N.D. -1.7 N.D. -0.1
mgl MGL +0.5 N.D. -2.0 N.D. +0.1
carbon source casaminos (C) +0.3 N.D. -1.7 N.D. +0.1
mgl MGL +0.5 N.D. -1.8 N.D. +0.0
carbon source Sucrose (C) +0.7 N.D. -2.1 N.D. +0.2
carbon source D-Glucose (C) +0.5 N.D. -1.7 N.D. +0.1
nitrogen source Ammonium chloride (N); RCH2 media; no shaking +0.7 N.D. -1.5 N.D. -0.0
carbon source Sucrose (C) +0.7 N.D. -1.6 N.D. +0.1
carbon source D,L-Lactate (C) +1.0 N.D. -1.3 N.D. +0.1
carbon source D-Xylose (C) +0.9 N.D. -1.3 N.D. +0.2
nf_with_fulln NF_with_fullN +1.0 N.D. -1.1 N.D. -0.1
nl-ccm; ambient oxygen NL-CCM; ambient oxygen -0.3 N.D. +1.9 N.D. +0.0
nl-ccm; ambient oxygen NL-CCM; ambient oxygen +0.1 N.D. +2.0 N.D. +0.1
nl-ccm; ambient oxygen NL-CCM; ambient oxygen -0.1 N.D. +2.4 N.D. +0.0
nl-ccm; ambient oxygen NL-CCM; ambient oxygen +0.6 N.D. +2.0 N.D. +0.0
nl-ccm; ambient oxygen NL-CCM; ambient oxygen +0.8 N.D. +2.2 N.D. +0.1
nl-ccm; ambient oxygen NL-CCM; ambient oxygen +0.6 N.D. +2.4 N.D. +0.1
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