Fitness for 5 genes in Rahnella sp. WP5

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500 ntEX31_RS14560 and EX31_RS14565 are separated by 189 nucleotidesEX31_RS14565 and EX31_RS14570 are separated by 11 nucleotidesEX31_RS14570 and EX31_RS14575 are separated by 116 nucleotidesEX31_RS14575 and EX31_RS14580 are separated by 48 nucleotides EX31_RS14560: EX31_RS14560 - Xaa-Pro dipeptidase, at 3,217 to 4,548 _RS14560 EX31_RS14565: EX31_RS14565 - fatty acid oxidation complex subunit alpha FadB, at 4,738 to 6,930 _RS14565 EX31_RS14570: EX31_RS14570 - acetyl-CoA C-acyltransferase FadA, at 6,942 to 8,105 _RS14570 EX31_RS14575: EX31_RS14575 - NAD(P)H-flavin reductase, at 8,222 to 8,923 _RS14575 EX31_RS14580: EX31_RS14580 - 4-hydroxy-3-polyprenylbenzoate decarboxylase, at 8,972 to 10,462 _RS14580
Group Condition EX31_RS14560 EX31_RS14565 EX31_RS14570 EX31_RS14575 EX31_RS14580
carbon source casaminos (C) -0.0 +0.2 -0.0 -2.1 N.D.
carbon source casaminos (C) +0.3 +0.0 +0.0 -2.0 N.D.
carbon source D,L-Lactate (C) -0.1 +0.2 -0.2 -1.4 N.D.
carbon source NLDM_metabolites (C) -0.2 -0.1 -0.2 -0.9 N.D.
nitrogen source L-Glutamine (N); RCH2 media; shaking +0.2 +0.0 -0.3 -1.2 N.D.
carbon source NLDM_metabolites (C) +0.1 -0.2 -0.0 -1.1 N.D.
nf_with_fulln NF_with_fullN -0.0 +0.0 -0.2 -0.9 N.D.
nitrogen source Ammonium chloride (N); RCH2 media; no shaking -0.0 -0.1 -0.1 -0.8 N.D.
nitrogen source L-Glutamine (N); ShewMM media; no shaking +0.0 -0.0 -0.1 -0.8 N.D.
nitrogen source Ammonium chloride (N); RCH2 media; shaking +0.0 +0.0 -0.1 -0.9 N.D.
nf_with_fulln NF_with_fullN -0.0 +0.1 -0.0 -0.9 N.D.
nf_with_fulln NF_with_fullN -0.0 +0.1 -0.1 -0.8 N.D.
nitrogen source Ammonium chloride (N); RCH2 media; shaking +0.1 -0.1 -0.0 -0.8 N.D.
nitrogen source L-Glutamine (N); ShewMM media; no shaking -0.1 +0.0 +0.1 -0.8 N.D.
nf_with_fulln NF_with_fullN -0.1 +0.1 -0.0 -0.7 N.D.
nitrogen source Ammonium chloride (N); RCH2 media; no shaking -0.0 -0.0 +0.1 -0.8 N.D.
nitrogen source Ammonium chloride (N); ShewMM media; no shaking +0.0 +0.1 -0.2 -0.6 N.D.
carbon source Sucrose (C) +0.1 -0.1 -0.0 -0.7 N.D.
nitrogen source Ammonium chloride (N); ShewMM media; no shaking -0.0 -0.2 +0.3 -0.7 N.D.
nitrogen source L-Glutamine (N); ShewMM media; no shaking +0.1 +0.0 -0.1 -0.7 N.D.
nitrogen source L-Glutamine (N); RCH2 media; no shaking +0.1 -0.1 +0.1 -0.6 N.D.
nitrogen source L-Glutamine (N); RCH2 media; no shaking +0.3 +0.1 -0.1 -0.3 N.D.
nitrogen source Ammonium chloride (N); ShewMM media; no shaking +0.2 +0.1 +0.2 -0.5 N.D.
nl-ccm; high oxygen NL-CCM; high oxygen -0.1 -0.0 +0.0 +0.8 N.D.
nl-ccm; ambient oxygen NL-CCM; ambient oxygen -0.1 -0.0 -0.0 +2.1 N.D.
nl-ccm; ambient oxygen NL-CCM; ambient oxygen +0.0 +0.1 +0.0 +1.9 N.D.
nl-ccm; ambient oxygen NL-CCM; ambient oxygen -0.0 +0.0 +0.0 +2.0 N.D.
nl-ccm; ambient oxygen NL-CCM; ambient oxygen -0.1 -0.0 +0.0 +2.3 N.D.
nl-ccm; ambient oxygen NL-CCM; ambient oxygen -0.0 +0.2 +0.1 +2.0 N.D.
nl-ccm; ambient oxygen NL-CCM; ambient oxygen +0.0 +0.0 +0.0 +2.1 N.D.
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EX31_RS14560
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EX31_RS14565
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EX31_RS14580
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