Fitness for 5 genes in Rahnella sp. WP5

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500 ntEX31_RS14415 and EX31_RS14420 overlap by 4 nucleotidesEX31_RS14420 and EX31_RS14425 are separated by 69 nucleotidesEX31_RS14425 and EX31_RS14430 are separated by 160 nucleotidesEX31_RS14430 and EX31_RS14435 overlap by 8 nucleotides EX31_RS14415: EX31_RS14415 - sugar glycosyltransferase, at 64,900 to 65,904 _RS14415 EX31_RS14420: EX31_RS14420 - O-antigen ligase family protein, at 65,901 to 67,187 _RS14420 EX31_RS14425: EX31_RS14425 - glycosyltransferase, at 67,257 to 68,264 _RS14425 EX31_RS14430: EX31_RS14430 - putative lipopolysaccharide heptosyltransferase III, at 68,425 to 69,507 _RS14430 EX31_RS14435: EX31_RS14435 - glycosyltransferase family 4 protein, at 69,500 to 70,645 _RS14435
Group Condition EX31_RS14415 EX31_RS14420 EX31_RS14425 EX31_RS14430 EX31_RS14435
nf_with_fulln NF_with_fullN -0.6 +0.1 +0.1 -0.0 -2.9
nl-ccm; high oxygen NL-CCM; high oxygen -1.5 -0.1 -0.1 -0.2 -1.4
nf_with_fulln NF_with_fullN -0.7 +0.2 +0.1 -0.0 -2.6
nf_with_fulln NF_with_fullN -0.8 +0.0 +0.1 -0.0 -2.3
nl-ccm; ambient oxygen NL-CCM; ambient oxygen -1.0 -0.2 -0.1 -0.0 -1.5
nl-ccm; high oxygen NL-CCM; high oxygen -1.0 -0.2 -0.1 -0.1 -1.4
nl-ccm; ambient oxygen NL-CCM; ambient oxygen -0.9 -0.2 -0.1 -0.1 -1.6
nl-ccm; ambient oxygen NL-CCM; ambient oxygen -1.0 -0.2 -0.1 -0.0 -1.5
nl-ccm; high oxygen NL-CCM; high oxygen -1.0 -0.0 -0.2 -0.1 -1.6
nf_with_fulln NF_with_fullN -0.6 +0.1 +0.1 -0.0 -2.4
nf_with10percent_fulln NF_with10percent_fullN -1.0 -0.1 -0.1 -0.1 -1.5
mgl MGL -0.4 +0.1 -0.0 -0.1 -2.4
nl-ccm; low oxygen NL-CCM; low oxygen -0.9 -0.1 -0.1 -0.2 -1.4
nf_with_fulln NF_with_fullN -0.6 +0.1 +0.1 -0.0 -2.1
nl-ccm; low oxygen NL-CCM; low oxygen -0.9 +0.1 -0.1 -0.2 -1.4
nf_with_fulln NF_with_fullN -0.5 +0.1 +0.1 -0.0 -2.0
mixed community NL-CCM; Mixed culture; Herbiconiux sp. 11RBC 2:1 starting OD to Azospirillum +0.7 +0.1 -0.2 +0.7 +1.1
mixed community NL-CCM; Mixed culture; Herbiconiux sp. 11RBC 2:1 starting OD to Azospirillum +0.6 +0.2 -0.2 +0.6 +1.2
carbon source D-Xylose (C) +0.7 -0.1 -0.1 +0.3 +1.7
nitrogen source L-Serine (N); RCH2 media; no shaking +0.8 +0.0 -0.0 +0.4 +1.5
mixed community NL-CCM; Mixed culture; Herbiconiux sp. 11RBC 2:1 starting OD to Azospirillum +0.7 +0.3 -0.0 +0.8 +1.1
mixed community NL-CCM; Mixed culture; Sphingobium sp. WW5 2:1 starting OD to Azospirillum +0.9 +0.1 +0.0 +0.6 +1.2
nitrogen source Ammonium chloride (N); RCH2 media; shaking +0.5 +0.0 -0.0 +0.3 +2.1
carbon source D-Xylose (C) +0.9 +0.0 -0.1 +0.3 +1.8
mixed community NL-CCM; Mixed culture; Herbiconiux sp. 11RBC 2:1 starting OD to Azospirillum +0.8 +0.3 -0.1 +0.7 +1.3
nitrogen source L-Serine (N); RCH2 media; shaking +0.6 +0.3 +0.0 +0.4 +1.7
mixed community NL-CCM; Mixed culture; Herbiconiux sp. 11RBC 2:1 starting OD to Azospirillum +0.8 +0.2 -0.1 +0.9 +1.4
carbon source D-Mannitol (C) +1.2 +0.1 -0.0 +0.3 +2.7
carbon source D,L-Lactate (C) +0.9 +0.3 +0.0 +0.7 +3.6
carbon source D,L-Lactate (C) +1.5 +0.2 +0.1 +0.7 +3.7
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