Fitness for 5 genes in Rahnella sp. WP5

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500 ntEX31_RS14140 and EX31_RS14145 are separated by 66 nucleotidesEX31_RS14145 and EX31_RS14150 are separated by 24 nucleotidesEX31_RS14150 and EX31_RS14155 are separated by 274 nucleotidesEX31_RS14155 and EX31_RS14160 overlap by 26 nucleotides EX31_RS14140: EX31_RS14140 - tRNA (uridine(54)-C5)-methyltransferase TrmA, at 3,331 to 4,431 _RS14140 EX31_RS14145: EX31_RS14145 - glycosyl hydrolase family 88, at 4,498 to 5,637 _RS14145 EX31_RS14150: EX31_RS14150 - MFS transporter, at 5,662 to 7,248 _RS14150 EX31_RS14155: EX31_RS14155 - YijD family membrane protein, at 7,523 to 7,882 _RS14155 EX31_RS14160: EX31_RS14160 - HTH-type transcriptional repressor FabR, at 7,857 to 8,537 _RS14160
Group Condition EX31_RS14140 EX31_RS14145 EX31_RS14150 EX31_RS14155 EX31_RS14160
carbon source Sucrose (C) +0.0 +0.1 +0.0 -0.2 -1.0
carbon source D-Glucose (C) +0.0 -0.0 -0.1 +0.1 -0.9
carbon source Sucrose (C) +0.0 +0.1 +0.0 +0.1 -0.9
nitrogen source L-Glutamine (N); RCH2 media; shaking -0.1 +0.1 +0.1 -0.1 -0.6
nitrogen source Ammonium chloride (N); RCH2 media; shaking -0.2 +0.1 +0.1 +0.2 -0.4
nitrogen source Ammonium chloride (N); RCH2 media; no shaking -0.2 +0.2 +0.1 +0.3 -0.4
mixed community NL-CCM; Mixed culture; Sphingobium sp. WW5 2:1 starting OD to Azospirillum +0.1 -0.1 +0.0 -0.1 +0.6
carbon source D,L-Lactate (C) +0.3 -0.1 -0.0 +0.2 +0.4
mixed community NL-CCM; Mixed culture; Sphingobium sp. HT1-2 2:1 starting OD to Azospirillum +0.1 -0.0 +0.0 +0.1 +0.6
mgl MGL +0.0 -0.1 -0.0 +0.2 +0.7
nl-ccm; ambient oxygen NL-CCM; ambient oxygen +0.1 -0.0 -0.0 +0.4 +0.5
nf_with_fulln NF_with_fullN +0.2 +0.0 +0.1 +0.3 +0.3
carbon source NLDM_metabolites (C) +0.1 +0.0 +0.0 +0.2 +0.7
nl-ccm; vial NL-CCM; vial +0.1 +0.1 +0.1 +0.2 +0.5
nf_with10percent_fulln NF_with10percent_fullN +0.2 +0.0 +0.0 +0.2 +0.6
nl-ccm; high oxygen NL-CCM; high oxygen +0.0 +0.1 +0.1 +0.4 +0.5
nf_with10percent_fulln NF_with10percent_fullN +0.2 +0.0 +0.1 +0.2 +0.5
nl-ccm; vial NL-CCM; vial +0.1 -0.0 +0.0 +0.2 +0.6
mixed community NL-CCM; Mixed culture; Sphingobium sp. WW5 2:1 starting OD to Azospirillum +0.1 +0.0 +0.0 +0.2 +0.7
nf_with10percent_fulln NF_with10percent_fullN +0.2 +0.0 +0.1 +0.1 +0.6
nf_with10percent_fulln NF_with10percent_fullN +0.2 +0.1 +0.1 +0.2 +0.7
nln NLN +0.1 +0.1 +0.1 +0.3 +0.7
nf_with10percent_fulln NF_with10percent_fullN +0.2 +0.0 +0.1 +0.3 +0.7
nln NLN +0.2 -0.0 +0.0 +0.2 +0.8
nln NLN +0.2 +0.1 +0.1 +0.1 +0.7
nln NLN +0.1 +0.1 +0.1 +0.4 +0.7
nf_with10percent_fulln NF_with10percent_fullN +0.2 +0.1 +0.1 +0.4 +0.6
nln NLN +0.1 +0.0 +0.1 +0.3 +0.9
carbon source NLDM_metabolites (C) +0.2 -0.1 -0.1 +0.4 +1.2
nln NLN +0.2 +0.1 +0.1 +0.3 +0.9
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EX31_RS14140
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