Fitness for 5 genes in Rahnella sp. WP5

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500 ntEX31_RS13865 and EX31_RS13870 are separated by 547 nucleotidesEX31_RS13870 and EX31_RS13875 are separated by 293 nucleotidesEX31_RS13875 and EX31_RS13880 are separated by 214 nucleotidesEX31_RS13880 and EX31_RS13885 are separated by 261 nucleotides EX31_RS13865: EX31_RS13865 - tRNA-Val, at 32,337 to 32,413 _RS13865 EX31_RS13870: EX31_RS13870 - pyruvate kinase PykF, at 32,961 to 34,373 _RS13870 EX31_RS13875: EX31_RS13875 - major outer membrane lipoprotein, at 34,667 to 34,903 _RS13875 EX31_RS13880: EX31_RS13880 - L,D-transpeptidase family protein, at 35,118 to 36,131 _RS13880 EX31_RS13885: EX31_RS13885 - cysteine desulfuration protein SufE, at 36,393 to 36,806 _RS13885
Group Condition EX31_RS13865 EX31_RS13870 EX31_RS13875 EX31_RS13880 EX31_RS13885
nitrogen source Ammonium chloride (N); RCH2 media; shaking N.D. -1.6 -1.0 -0.1 N.D.
nitrogen source L-Glutamine (N); ShewMM media; no shaking N.D. -1.1 -1.0 -0.0 N.D.
nitrogen source L-Glutamine (N); RCH2 media; shaking N.D. -1.0 -1.1 +0.1 N.D.
nitrogen source L-Glutamine (N); RCH2 media; no shaking N.D. -1.0 -0.8 -0.0 N.D.
nf_with_fulln NF_with_fullN N.D. -1.4 -0.7 +0.3 N.D.
nf_with10percent_fulln NF_with10percent_fullN N.D. -1.1 -0.5 +0.1 N.D.
nitrogen source Ammonium chloride (N); RCH2 media; no shaking N.D. -0.9 -0.7 +0.1 N.D.
nf_with_fulln NF_with_fullN N.D. -1.0 -0.7 +0.2 N.D.
nitrogen source L-Serine (N); RCH2 media; no shaking N.D. -1.0 -0.6 +0.3 N.D.
nitrogen source L-Serine (N); RCH2 media; shaking N.D. -0.4 -1.1 +0.3 N.D.
nitrogen source L-Serine (N); ShewMM media; shaking N.D. -0.9 -0.6 +0.4 N.D.
nf_with_fulln NF_with_fullN N.D. -1.1 -0.4 +0.4 N.D.
mgl MGL N.D. -1.4 +0.5 -0.1 N.D.
nf_with_fulln NF_with_fullN N.D. -0.8 -0.6 +0.3 N.D.
nl-ccm; ambient oxygen NL-CCM; ambient oxygen N.D. -2.6 +1.7 -0.0 N.D.
nf_with_fulln NF_with_fullN N.D. -0.9 -0.5 +0.4 N.D.
nitrogen source L-Glutamine (N); RCH2 media; shaking N.D. +0.4 -1.1 +0.1 N.D.
carbon source D-Mannitol (C) N.D. -0.9 +0.8 -0.2 N.D.
nitrogen source L-Glutamine (N); ShewMM media; shaking N.D. +1.0 -0.8 +0.1 N.D.
nl-ccm; high oxygen NL-CCM; high oxygen N.D. -0.7 +1.2 -0.1 N.D.
nl-ccm; high oxygen NL-CCM; high oxygen N.D. +0.4 +1.0 -0.3 N.D.
nl-ccm; ambient oxygen NL-CCM; ambient oxygen N.D. -0.5 +1.9 -0.2 N.D.
mixed community NL-CCM; Mixed culture; Sphingobium sp. WW5 2:1 starting OD to Azospirillum N.D. +1.1 +0.5 -0.2 N.D.
nl-ccm; ambient oxygen NL-CCM; ambient oxygen N.D. -0.3 +2.1 -0.1 N.D.
carbon source D,L-Lactate (C) N.D. +0.9 +0.9 -0.1 N.D.
nl-ccm; ambient oxygen NL-CCM; ambient oxygen N.D. +0.0 +1.7 -0.1 N.D.
nl-ccm_agar NL-CCM_agar N.D. +1.0 +0.8 +0.0 N.D.
nl-ccm; ambient oxygen NL-CCM; ambient oxygen N.D. +0.4 +1.7 -0.2 N.D.
carbon source D-Glucose (C) N.D. +0.9 +1.1 -0.0 N.D.
nl-ccm; ambient oxygen NL-CCM; ambient oxygen N.D. +0.3 +2.1 -0.0 N.D.
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