Fitness for 5 genes in Rahnella sp. WP5

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500 ntEX31_RS13840 and EX31_RS13845 are separated by 360 nucleotidesEX31_RS13845 and EX31_RS13850 are separated by 78 nucleotidesEX31_RS13850 and EX31_RS13855 are separated by 254 nucleotidesEX31_RS13855 and EX31_RS13860 are separated by 221 nucleotides EX31_RS13840: EX31_RS13840 - Bcr/CflA family multidrug efflux MFS transporter, at 26,926 to 28,137 _RS13840 EX31_RS13845: EX31_RS13845 - cyclopropane fatty acyl phospholipid synthase, at 28,498 to 29,649 _RS13845 EX31_RS13850: EX31_RS13850 - riboflavin synthase, at 29,728 to 30,381 _RS13850 EX31_RS13855: EX31_RS13855 - MATE family efflux transporter, at 30,636 to 32,009 _RS13855 EX31_RS13860: EX31_RS13860 - tRNA-Val, at 32,231 to 32,307 _RS13860
Group Condition EX31_RS13840 EX31_RS13845 EX31_RS13850 EX31_RS13855 EX31_RS13860
nf_with_fulln NF_with_fullN +0.1 -1.5 N.D. +0.0 N.D.
nf_with_fulln NF_with_fullN +0.0 -1.2 N.D. -0.1 N.D.
nf_with_fulln NF_with_fullN +0.2 -1.3 N.D. -0.1 N.D.
nf_with_fulln NF_with_fullN +0.2 -1.3 N.D. -0.0 N.D.
nf_with_fulln NF_with_fullN +0.2 -1.3 N.D. +0.0 N.D.
nf_with_fulln NF_with_fullN +0.2 -1.3 N.D. -0.1 N.D.
nl-ccm; high oxygen NL-CCM; high oxygen -0.1 -0.4 N.D. -0.1 N.D.
nl-ccm; low oxygen NL-CCM; low oxygen +0.0 -0.4 N.D. -0.2 N.D.
nitrogen source L-Glutamine (N); ShewMM media; no shaking -0.2 -0.3 N.D. +0.1 N.D.
nl-ccm; low oxygen NL-CCM; low oxygen +0.1 -0.4 N.D. -0.1 N.D.
nl-ccm; ambient oxygen NL-CCM; ambient oxygen +0.1 -0.3 N.D. -0.2 N.D.
nitrogen source L-Serine (N); RCH2 media; no shaking -0.3 -0.1 N.D. +0.1 N.D.
mixed community NL-CCM; Mixed culture; Sphingobium sp. HT1-2 2:1 starting OD to Azospirillum -0.2 +0.1 N.D. -0.2 N.D.
mixed community NL-CCM; Mixed culture; Sphingobium sp. HT1-2 2:1 starting OD to Azospirillum -0.3 +0.2 N.D. -0.3 N.D.
nf_with10percent_fulln NF_with10percent_fullN +0.2 -0.3 N.D. -0.2 N.D.
nf_with10percent_fulln NF_with10percent_fullN +0.2 -0.3 N.D. -0.1 N.D.
nf_with10percent_fulln NF_with10percent_fullN +0.2 -0.3 N.D. -0.1 N.D.
nitrogen source Ammonium chloride (N); RCH2 media; no shaking -0.0 -0.4 N.D. +0.3 N.D.
mixed community NL-CCM; Mixed culture; Sphingobium sp. HT1-2 2:1 starting OD to Azospirillum -0.2 +0.3 N.D. -0.1 N.D.
nitrogen source Ammonium chloride (N); RCH2 media; no shaking +0.3 -0.3 N.D. +0.1 N.D.
mixed community NL-CCM; Mixed culture; Sphingobium sp. WW5 2:1 starting OD to Azospirillum -0.2 +0.3 N.D. +0.0 N.D.
mixed community NL-CCM; Mixed culture; Herbiconiux sp. 11RBC 2:1 starting OD to Azospirillum -0.1 +0.4 N.D. -0.0 N.D.
mixed community NL-CCM; Mixed culture; Sphingobium sp. WW5 2:1 starting OD to Azospirillum -0.0 +0.4 N.D. -0.1 N.D.
mixed community NL-CCM; Mixed culture; Herbiconiux sp. 11RBC 2:1 starting OD to Azospirillum -0.0 +0.5 N.D. -0.1 N.D.
carbon source D,L-Lactate (C) -0.3 +0.9 N.D. -0.2 N.D.
mixed community NL-CCM; Mixed culture; Herbiconiux sp. 11RBC 2:1 starting OD to Azospirillum -0.1 +0.6 N.D. +0.0 N.D.
carbon source casaminos (C) -0.0 +0.5 N.D. +0.0 N.D.
carbon source Sucrose (C) +0.1 +0.2 N.D. +0.3 N.D.
carbon source D,L-Lactate (C) -0.1 +0.7 N.D. +0.0 N.D.
carbon source D-Glucose (C) +0.1 +0.4 N.D. +0.2 N.D.
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