Fitness for 5 genes in Rahnella sp. WP5

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500 ntEX31_RS13745 and EX31_RS13750 are separated by 103 nucleotidesEX31_RS13750 and EX31_RS13755 are separated by 162 nucleotidesEX31_RS13755 and EX31_RS13760 are separated by 127 nucleotidesEX31_RS13760 and EX31_RS13765 are separated by 84 nucleotides EX31_RS13745: EX31_RS13745 - pyridoxal kinase PdxY, at 8,818 to 9,678 _RS13745 EX31_RS13750: EX31_RS13750 - tyrosine--tRNA ligase, at 9,782 to 11,056 _RS13750 EX31_RS13755: EX31_RS13755 - pyridoxamine 5'-phosphate oxidase, at 11,219 to 11,884 _RS13755 EX31_RS13760: EX31_RS13760 - hypothetical protein, at 12,012 to 12,323 _RS13760 EX31_RS13765: EX31_RS13765 - anhydro-N-acetylmuramic acid kinase, at 12,408 to 13,526 _RS13765
Group Condition EX31_RS13745 EX31_RS13750 EX31_RS13755 EX31_RS13760 EX31_RS13765
mixed community NL-CCM; Mixed culture; Sphingobium sp. WW5 2:1 starting OD to Azospirillum -1.0 N.D. N.D. -0.1 -0.3
nl-ccm; high oxygen NL-CCM; high oxygen -1.0 N.D. N.D. -0.1 -0.3
nf_with10percent_fulln NF_with10percent_fullN -1.0 N.D. N.D. -0.1 -0.1
nl-ccm_agar NL-CCM_agar -0.7 N.D. N.D. -0.1 -0.3
nl-ccm; ambient oxygen NL-CCM; ambient oxygen -0.8 N.D. N.D. -0.3 -0.1
mixed community NL-CCM; Mixed culture; Sphingobium sp. HT1-2 2:1 starting OD to Azospirillum -0.3 N.D. N.D. -0.5 -0.3
mixed community NL-CCM; Mixed culture; Sphingobium sp. HT1-2 2:1 starting OD to Azospirillum -0.6 N.D. N.D. -0.2 -0.1
nf_with_fulln NF_with_fullN -0.4 N.D. N.D. +0.1 -0.4
carbon source D-Glucose (C) -0.8 N.D. N.D. -0.1 +0.3
carbon source Sucrose (C) -0.4 N.D. N.D. -0.4 +0.2
mgl MGL -0.4 N.D. N.D. -0.4 +0.3
nitrogen source L-Serine (N); RCH2 media; shaking -0.8 N.D. N.D. +0.1 +0.2
nitrogen source L-Glutamine (N); ShewMM media; no shaking -0.5 N.D. N.D. -0.2 +0.3
carbon source D-Xylose (C) -0.6 N.D. N.D. +0.2 +0.1
carbon source NLDM_metabolites (C) +0.3 N.D. N.D. -0.7 +0.2
carbon source casaminos (C) -0.8 N.D. N.D. +0.2 +0.4
mgl MGL -0.6 N.D. N.D. +0.4 +0.1
carbon source D-Mannitol (C) -0.6 N.D. N.D. +0.6 +0.0
carbon source D,L-Lactate (C) -0.8 N.D. N.D. +0.5 +0.5
nitrogen source Ammonium chloride (N); ShewMM media; shaking +0.5 N.D. N.D. +0.3 -0.3
carbon source D,L-Lactate (C) -0.4 N.D. N.D. +0.4 +0.4
nitrogen source Ammonium chloride (N); RCH2 media; no shaking +0.6 N.D. N.D. -0.2 +0.3
nitrogen source L-Serine (N); ShewMM media; no shaking +0.6 N.D. N.D. -0.1 +0.2
nitrogen source Ammonium chloride (N); RCH2 media; no shaking +0.3 N.D. N.D. +0.4 +0.2
nitrogen source L-Serine (N); RCH2 media; no shaking +0.1 N.D. N.D. +0.5 +0.3
nitrogen source L-Serine (N); ShewMM media; no shaking +0.2 N.D. N.D. +0.6 +0.2
nitrogen source Ammonium chloride (N); RCH2 media; shaking +0.5 N.D. N.D. +0.2 +0.3
nitrogen source L-Glutamine (N); ShewMM media; shaking +0.4 N.D. N.D. +0.3 +0.4
nitrogen source Ammonium chloride (N); ShewMM media; shaking +0.9 N.D. N.D. +0.1 +0.1
carbon source NLDM_metabolites (C) +1.1 N.D. N.D. +0.2 +0.5
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