Fitness for 5 genes in Rahnella sp. WP5

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500 ntEX31_RS13555 and EX31_RS13560 are separated by 123 nucleotidesEX31_RS13560 and EX31_RS13565 are separated by 257 nucleotidesEX31_RS13565 and EX31_RS13570 are separated by 10 nucleotidesEX31_RS13570 and EX31_RS13575 overlap by 19 nucleotides EX31_RS13555: EX31_RS13555 - PLP-dependent aminotransferase family protein, at 145,929 to 147,380 _RS13555 EX31_RS13560: EX31_RS13560 - carboxymuconolactone decarboxylase family protein, at 147,504 to 147,935 _RS13560 EX31_RS13565: EX31_RS13565 - glutaredoxin-like protein NrdH, at 148,193 to 148,432 _RS13565 EX31_RS13570: EX31_RS13570 - class Ib ribonucleoside-diphosphate reductase assembly flavoprotein NrdI, at 148,443 to 148,847 _RS13570 EX31_RS13575: EX31_RS13575 - class 1b ribonucleoside-diphosphate reductase subunit alpha, at 148,829 to 150,991 _RS13575
Group Condition EX31_RS13555 EX31_RS13560 EX31_RS13565 EX31_RS13570 EX31_RS13575
carbon source NLDM_metabolites (C) -0.2 -0.7 -0.5 -0.1 +0.0
nitrogen source L-Serine (N); RCH2 media; no shaking +0.1 -0.9 -0.1 -0.1 -0.1
mixed community NL-CCM; Mixed culture; Sphingobium sp. WW5 2:1 starting OD to Azospirillum -0.2 -0.8 -0.0 -0.1 -0.0
nitrogen source L-Serine (N); RCH2 media; no shaking -0.1 -0.0 -0.3 -0.2 -0.0
nl-ccm; vial NL-CCM; vial -0.0 -0.3 -0.2 -0.1 +0.0
nln NLN -0.0 -0.4 -0.2 +0.0 -0.0
nitrogen source Ammonium chloride (N); RCH2 media; shaking -0.1 +0.0 -0.3 -0.1 -0.0
nitrogen source L-Glutamine (N); ShewMM media; shaking -0.2 -0.5 +0.1 +0.2 -0.1
carbon source NLDM_metabolites (C) -0.1 -0.8 +0.5 -0.2 +0.1
mixed community NL-CCM; Mixed culture; Sphingobium sp. WW5 2:1 starting OD to Azospirillum +0.0 -0.4 +0.0 -0.1 -0.0
mgl MGL +0.0 -0.5 +0.0 -0.0 -0.0
mgl MGL +0.1 -0.2 +0.0 -0.2 -0.1
carbon source D-Xylose (C) -0.1 -0.3 -0.2 +0.1 +0.0
nl-ccm; ambient oxygen NL-CCM; ambient oxygen +0.0 -0.4 +0.2 +0.1 -0.1
mixed community NL-CCM; Mixed culture; Herbiconiux sp. 11RBC 2:1 starting OD to Azospirillum +0.1 -0.1 +0.1 -0.2 -0.1
nitrogen source L-Glutamine (N); ShewMM media; no shaking +0.1 -0.5 +0.1 +0.1 -0.0
carbon source D-Xylose (C) +0.1 +0.0 -0.3 -0.2 +0.1
nitrogen source L-Glutamine (N); ShewMM media; shaking +0.1 -0.4 +0.1 +0.1 -0.0
mixed community NL-CCM; Mixed culture; Sphingobium sp. HT1-2 2:1 starting OD to Azospirillum -0.1 -0.2 +0.2 -0.0 -0.1
nl-ccm; ambient oxygen NL-CCM; ambient oxygen -0.1 +0.2 -0.1 -0.2 -0.1
nitrogen source Ammonium chloride (N); RCH2 media; shaking -0.1 -0.4 +0.2 +0.1 +0.0
nl-ccm; high oxygen NL-CCM; high oxygen +0.1 -0.2 +0.2 -0.1 -0.1
carbon source D,L-Lactate (C) -0.1 +0.1 +0.3 -0.3 +0.0
nitrogen source L-Serine (N); RCH2 media; no shaking +0.0 +0.3 -0.2 -0.0 -0.1
carbon source D,L-Lactate (C) -0.1 +0.5 -0.2 -0.1 +0.0
carbon source Sucrose (C) +0.1 +0.3 -0.4 +0.1 -0.0
nitrogen source L-Glutamine (N); RCH2 media; shaking -0.1 +0.2 -0.2 +0.1 +0.0
nitrogen source L-Serine (N); ShewMM media; no shaking -0.0 -0.2 +0.2 +0.2 -0.0
nitrogen source L-Serine (N); ShewMM media; no shaking +0.0 +0.4 -0.0 -0.2 -0.0
mixed community NL-CCM; Mixed culture; Sphingobium sp. HT1-2 2:1 starting OD to Azospirillum -0.0 +0.3 +0.2 -0.0 -0.0
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