Fitness for 5 genes in Rahnella sp. WP5

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500 ntEX31_RS13535 and EX31_RS13540 are separated by 152 nucleotidesEX31_RS13540 and EX31_RS13545 are separated by 50 nucleotidesEX31_RS13545 and EX31_RS13550 are separated by 187 nucleotidesEX31_RS13550 and EX31_RS13555 are separated by 0 nucleotides EX31_RS13535: EX31_RS13535 - DUF883 domain-containing protein, at 139,957 to 140,262 _RS13535 EX31_RS13540: EX31_RS13540 - mannosylglycerate hydrolase, at 140,415 to 143,042 _RS13540 EX31_RS13545: EX31_RS13545 - PTS 2-O-a-mannosyl-D-glycerate transporter subunit IIABC, at 143,093 to 145,021 _RS13545 EX31_RS13550: EX31_RS13550 - GntR family transcriptional regulator, at 145,209 to 145,928 _RS13550 EX31_RS13555: EX31_RS13555 - PLP-dependent aminotransferase family protein, at 145,929 to 147,380 _RS13555
Group Condition EX31_RS13535 EX31_RS13540 EX31_RS13545 EX31_RS13550 EX31_RS13555
carbon source NLDM_metabolites (C) -0.6 +0.1 -0.3 +0.0 -0.1
carbon source NLDM_metabolites (C) -0.3 -0.2 -0.1 +0.0 -0.2
carbon source casaminos (C) -0.3 -0.1 -0.1 -0.2 -0.1
mixed community NL-CCM; Mixed culture; Sphingobium sp. HT1-2 2:1 starting OD to Azospirillum -0.2 -0.1 -0.1 +0.0 -0.0
nitrogen source L-Serine (N); RCH2 media; shaking -0.4 -0.1 +0.1 +0.0 +0.0
carbon source casaminos (C) -0.1 -0.1 +0.0 -0.2 +0.0
carbon source D-Mannitol (C) +0.1 -0.1 -0.1 +0.0 -0.2
mixed community NL-CCM; Mixed culture; Sphingobium sp. WW5 2:1 starting OD to Azospirillum -0.3 -0.0 -0.0 +0.1 +0.0
nitrogen source L-Glutamine (N); RCH2 media; shaking -0.2 +0.1 +0.1 -0.1 +0.1
carbon source D-Glucose (C) -0.3 -0.0 -0.0 +0.1 +0.1
carbon source D,L-Lactate (C) -0.1 -0.2 +0.1 +0.3 -0.1
mixed community NL-CCM; Mixed culture; Sphingobium sp. WW5 2:1 starting OD to Azospirillum +0.1 -0.0 -0.1 -0.1 +0.1
mixed community NL-CCM; Mixed culture; Herbiconiux sp. 11RBC 2:1 starting OD to Azospirillum -0.2 +0.0 +0.0 +0.2 -0.0
nitrogen source Ammonium chloride (N); ShewMM media; shaking -0.2 +0.1 +0.1 +0.1 +0.1
carbon source D,L-Lactate (C) -0.1 +0.0 +0.0 +0.3 -0.1
nl-ccm; ambient oxygen NL-CCM; ambient oxygen -0.1 -0.0 +0.1 +0.2 -0.0
nf_with_fulln NF_with_fullN -0.1 +0.1 -0.0 +0.2 +0.1
nitrogen source Ammonium chloride (N); RCH2 media; no shaking +0.2 -0.1 +0.1 +0.1 -0.1
mixed community NL-CCM; Mixed culture; Herbiconiux sp. 11RBC 2:1 starting OD to Azospirillum +0.1 +0.1 -0.1 +0.1 +0.0
nl-ccm; high oxygen NL-CCM; high oxygen -0.2 +0.1 +0.1 +0.2 +0.1
nitrogen source L-Glutamine (N); RCH2 media; no shaking +0.3 -0.1 +0.1 +0.2 -0.2
nitrogen source L-Glutamine (N); ShewMM media; no shaking +0.2 +0.1 +0.1 -0.1 +0.0
nf_with_fulln NF_with_fullN -0.1 -0.0 +0.1 +0.2 +0.1
nitrogen source Ammonium chloride (N); ShewMM media; no shaking +0.3 -0.0 -0.1 +0.1 +0.1
nln NLN +0.1 +0.0 +0.1 +0.2 -0.0
nl-ccm; high oxygen NL-CCM; high oxygen +0.1 -0.0 +0.0 +0.2 +0.1
nf_with10percent_fulln NF_with10percent_fullN +0.1 -0.0 +0.1 +0.2 +0.0
nl-ccm; ambient oxygen NL-CCM; ambient oxygen +0.2 -0.0 +0.0 +0.3 -0.0
carbon source D-Xylose (C) +0.4 -0.0 -0.1 +0.3 -0.1
nitrogen source L-Glutamine (N); RCH2 media; no shaking +0.3 +0.1 +0.1 +0.3 +0.0
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EX31_RS13555
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