Fitness for 5 genes in Rahnella sp. WP5

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500 ntEX31_RS13525 and EX31_RS13530 are separated by 126 nucleotidesEX31_RS13530 and EX31_RS13535 are separated by 272 nucleotidesEX31_RS13535 and EX31_RS13540 are separated by 152 nucleotidesEX31_RS13540 and EX31_RS13545 are separated by 50 nucleotides EX31_RS13525: EX31_RS13525 - DUF2002 family protein, at 138,026 to 138,361 _RS13525 EX31_RS13530: EX31_RS13530 - MFS transporter, at 138,488 to 139,684 _RS13530 EX31_RS13535: EX31_RS13535 - DUF883 domain-containing protein, at 139,957 to 140,262 _RS13535 EX31_RS13540: EX31_RS13540 - mannosylglycerate hydrolase, at 140,415 to 143,042 _RS13540 EX31_RS13545: EX31_RS13545 - PTS 2-O-a-mannosyl-D-glycerate transporter subunit IIABC, at 143,093 to 145,021 _RS13545
Group Condition EX31_RS13525 EX31_RS13530 EX31_RS13535 EX31_RS13540 EX31_RS13545
carbon source NLDM_metabolites (C) -0.0 +0.1 -0.6 +0.1 -0.3
carbon source casaminos (C) -0.1 +0.0 -0.3 -0.1 -0.1
nitrogen source L-Serine (N); RCH2 media; shaking +0.0 -0.1 -0.4 -0.1 +0.1
carbon source NLDM_metabolites (C) -0.1 +0.1 -0.3 -0.2 -0.1
mgl MGL -0.1 -0.2 -0.1 -0.0 -0.2
nl-ccm; vial NL-CCM; vial -0.0 -0.2 -0.2 +0.0 -0.1
mixed community NL-CCM; Mixed culture; Sphingobium sp. HT1-2 2:1 starting OD to Azospirillum +0.0 -0.1 -0.2 -0.1 -0.1
mixed community NL-CCM; Mixed culture; Sphingobium sp. HT1-2 2:1 starting OD to Azospirillum -0.1 +0.1 -0.3 -0.0 -0.0
carbon source D-Mannitol (C) -0.1 -0.1 +0.1 -0.1 -0.1
nl-ccm; vial NL-CCM; vial +0.1 -0.2 -0.2 -0.0 +0.0
nitrogen source L-Glutamine (N); RCH2 media; shaking -0.1 -0.1 +0.1 -0.1 -0.0
nitrogen source L-Glutamine (N); RCH2 media; shaking +0.0 -0.1 -0.2 +0.1 +0.1
nl-ccm; low oxygen NL-CCM; low oxygen -0.2 -0.1 +0.1 -0.0 +0.1
mixed community NL-CCM; Mixed culture; Sphingobium sp. HT1-2 2:1 starting OD to Azospirillum -0.1 +0.1 -0.2 +0.1 -0.1
mixed community NL-CCM; Mixed culture; Sphingobium sp. WW5 2:1 starting OD to Azospirillum -0.0 -0.1 +0.1 -0.0 -0.1
nitrogen source L-Serine (N); RCH2 media; no shaking +0.1 -0.3 +0.1 +0.0 -0.0
nitrogen source L-Serine (N); ShewMM media; no shaking -0.2 -0.1 +0.1 +0.2 -0.0
nf_with10percent_fulln NF_with10percent_fullN -0.2 -0.1 +0.1 +0.0 +0.1
nl-ccm; ambient oxygen NL-CCM; ambient oxygen -0.2 +0.0 +0.2 +0.0 -0.0
nitrogen source Ammonium chloride (N); ShewMM media; no shaking +0.0 -0.2 +0.3 -0.0 -0.1
nitrogen source L-Glutamine (N); RCH2 media; no shaking -0.1 -0.1 +0.3 -0.1 +0.1
nitrogen source Ammonium chloride (N); ShewMM media; shaking -0.1 -0.1 +0.2 -0.0 +0.1
mixed community NL-CCM; Mixed culture; Herbiconiux sp. 11RBC 2:1 starting OD to Azospirillum +0.1 +0.2 -0.0 -0.1 -0.1
nl-ccm; ambient oxygen NL-CCM; ambient oxygen -0.1 +0.1 +0.2 -0.0 +0.0
nitrogen source Ammonium chloride (N); ShewMM media; shaking +0.1 +0.1 -0.2 +0.1 +0.1
nitrogen source Ammonium chloride (N); RCH2 media; no shaking +0.1 -0.0 +0.2 -0.1 +0.1
nitrogen source L-Glutamine (N); RCH2 media; no shaking -0.0 -0.2 +0.3 +0.1 +0.1
carbon source Sucrose (C) -0.0 +0.3 -0.1 -0.0 +0.1
nitrogen source L-Glutamine (N); ShewMM media; no shaking -0.1 +0.1 +0.2 +0.1 +0.1
carbon source D-Xylose (C) +0.1 +0.1 +0.4 -0.0 -0.1
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EX31_RS13525
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EX31_RS13530
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EX31_RS13545
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