Fitness for 5 genes in Rahnella sp. WP5

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500 ntEX31_RS13295 and EX31_RS13300 are separated by 163 nucleotidesEX31_RS13300 and EX31_RS13305 are separated by 129 nucleotidesEX31_RS13305 and EX31_RS13310 are separated by 183 nucleotidesEX31_RS13310 and EX31_RS13315 are separated by 6 nucleotides EX31_RS13295: EX31_RS13295 - MBL fold metallo-hydrolase, at 87,486 to 88,355 _RS13295 EX31_RS13300: EX31_RS13300 - tetratricopeptide repeat protein, at 88,519 to 89,235 _RS13300 EX31_RS13305: EX31_RS13305 - ABC transporter ATP-binding protein/permease, at 89,365 to 91,119 _RS13305 EX31_RS13310: EX31_RS13310 - GntR family transcriptional regulator, at 91,303 to 92,043 _RS13310 EX31_RS13315: EX31_RS13315 - PTS transporter subunit EIIC, at 92,050 to 93,651 _RS13315
Group Condition EX31_RS13295 EX31_RS13300 EX31_RS13305 EX31_RS13310 EX31_RS13315
nitrogen source L-Glutamine (N); RCH2 media; no shaking +0.1 -0.1 -0.0 -0.5 -0.1
mixed community NL-CCM; Mixed culture; Sphingobium sp. HT1-2 2:1 starting OD to Azospirillum -0.1 -0.1 +0.2 -0.5 -0.0
nitrogen source L-Glutamine (N); RCH2 media; no shaking +0.0 +0.1 +0.0 -0.6 -0.0
nl-ccm NL-CCM -0.1 -0.1 +0.1 -0.4 +0.0
nl-ccm NL-CCM -0.0 -0.1 +0.2 -0.4 -0.1
nitrogen source L-Glutamine (N); RCH2 media; no shaking +0.1 +0.1 +0.0 -0.6 -0.0
mixed community NL-CCM; Mixed culture; Sphingobium sp. HT1-2 2:1 starting OD to Azospirillum -0.2 -0.1 +0.1 -0.2 +0.0
mixed community NL-CCM; Mixed culture; Sphingobium sp. HT1-2 2:1 starting OD to Azospirillum +0.1 -0.0 +0.1 -0.5 +0.1
nl-ccm; high oxygen NL-CCM; high oxygen -0.1 -0.1 +0.3 -0.3 +0.0
mixed community NL-CCM; Mixed culture; Sphingobium sp. WW5 2:1 starting OD to Azospirillum -0.0 -0.1 +0.2 -0.3 +0.1
nl-ccm NL-CCM -0.0 -0.1 +0.1 -0.4 +0.1
nl-ccm NL-CCM +0.1 -0.1 +0.2 -0.4 +0.1
nf_with10percent_fulln NF_with10percent_fullN -0.0 -0.1 +0.2 -0.3 +0.0
nln NLN -0.2 -0.1 +0.2 -0.3 +0.1
nln NLN +0.0 -0.1 +0.2 -0.3 +0.0
carbon source D,L-Lactate (C) -0.0 +0.1 +0.0 -0.5 +0.3
nln NLN -0.1 -0.1 +0.3 -0.3 +0.1
nln NLN +0.0 -0.1 +0.2 -0.3 +0.1
nf_with10percent_fulln NF_with10percent_fullN -0.2 -0.1 +0.3 -0.2 +0.1
carbon source casaminos (C) +0.1 -0.1 +0.1 -0.3 +0.2
nitrogen source L-Serine (N); RCH2 media; no shaking +0.1 -0.0 +0.0 -0.4 +0.2
nl-ccm; high oxygen NL-CCM; high oxygen -0.2 +0.0 +0.2 -0.2 +0.1
nl-ccm; low oxygen NL-CCM; low oxygen +0.1 +0.0 +0.2 -0.4 +0.1
nl-ccm; high oxygen NL-CCM; high oxygen -0.0 -0.0 +0.2 -0.3 +0.1
nl-ccm; high oxygen NL-CCM; high oxygen -0.1 +0.0 +0.2 -0.2 +0.1
nf_with10percent_fulln NF_with10percent_fullN +0.1 -0.0 +0.2 -0.3 +0.1
nl-ccm; high oxygen NL-CCM; high oxygen +0.1 -0.0 +0.2 -0.2 +0.1
carbon source D,L-Lactate (C) +0.2 +0.1 -0.1 -0.0 +0.2
carbon source NLDM_metabolites (C) +0.3 +0.1 -0.1 +0.1 -0.1
nitrogen source Ammonium chloride (N); ShewMM media; no shaking +0.3 -0.0 -0.1 +0.3 -0.1
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EX31_RS13295
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EX31_RS13300
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EX31_RS13310
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EX31_RS13315
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