Fitness for 5 genes in Rahnella sp. WP5

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500 ntEX31_RS13240 and EX31_RS13245 overlap by 4 nucleotidesEX31_RS13245 and EX31_RS13250 are separated by 5 nucleotidesEX31_RS13250 and EX31_RS13255 are separated by 38 nucleotidesEX31_RS13255 and EX31_RS13260 are separated by 14 nucleotides EX31_RS13240: EX31_RS13240 - HTH-type transcriptional regulator GalR, at 76,522 to 77,529 _RS13240 EX31_RS13245: EX31_RS13245 - GNAT family N-acetyltransferase, at 77,526 to 77,975 _RS13245 EX31_RS13250: EX31_RS13250 - FCD domain-containing protein, at 77,981 to 78,754 _RS13250 EX31_RS13255: EX31_RS13255 - PTS sugar transporter subunit IIB, at 78,793 to 79,110 _RS13255 EX31_RS13260: EX31_RS13260 - glycoside hydrolase family 1 protein, at 79,125 to 80,561 _RS13260
Group Condition EX31_RS13240 EX31_RS13245 EX31_RS13250 EX31_RS13255 EX31_RS13260
carbon source D,L-Lactate (C) -2.6 +0.1 +0.4 +0.2 +0.1
carbon source D,L-Lactate (C) -2.1 +0.3 +0.5 +0.2 +0.1
nitrogen source Ammonium chloride (N); ShewMM media; shaking -0.4 -0.1 -0.0 -0.5 +0.0
carbon source casaminos (C) -0.8 -0.1 -0.0 +0.1 -0.1
carbon source casaminos (C) -0.8 +0.3 +0.1 -0.2 -0.1
nitrogen source Ammonium chloride (N); RCH2 media; shaking -0.2 -0.0 -0.1 -0.3 +0.0
nitrogen source L-Serine (N); RCH2 media; no shaking -0.2 -0.1 +0.1 -0.2 +0.0
nitrogen source L-Serine (N); RCH2 media; shaking -0.3 -0.1 +0.1 -0.2 +0.1
nitrogen source Ammonium chloride (N); RCH2 media; no shaking -0.3 -0.2 -0.0 +0.2 +0.0
carbon source D-Mannitol (C) -0.4 +0.1 -0.1 +0.1 +0.1
nitrogen source L-Serine (N); RCH2 media; shaking -0.3 -0.2 +0.0 +0.1 +0.0
nl-ccm; ambient oxygen NL-CCM; ambient oxygen +0.1 -0.1 +0.1 -0.3 -0.1
nitrogen source L-Glutamine (N); ShewMM media; shaking -0.3 -0.1 -0.1 +0.2 -0.0
nitrogen source L-Serine (N); ShewMM media; no shaking -0.1 -0.2 -0.1 +0.3 -0.0
nitrogen source L-Serine (N); RCH2 media; no shaking -0.3 +0.1 -0.1 +0.2 -0.0
carbon source D-Mannitol (C) -0.4 +0.1 +0.0 +0.2 +0.0
nitrogen source L-Glutamine (N); ShewMM media; no shaking -0.3 -0.2 +0.1 +0.4 +0.1
nitrogen source L-Serine (N); ShewMM media; shaking -0.1 -0.1 +0.1 +0.3 -0.0
nl-ccm; high oxygen NL-CCM; high oxygen +0.1 -0.1 -0.1 +0.2 -0.1
nitrogen source Ammonium chloride (N); RCH2 media; shaking -0.2 -0.2 +0.2 +0.2 +0.0
nl-ccm; ambient oxygen NL-CCM; ambient oxygen +0.2 -0.2 +0.1 +0.1 -0.1
carbon source NLDM_metabolites (C) +0.2 +0.1 +0.0 -0.2 +0.1
nitrogen source L-Serine (N); RCH2 media; no shaking -0.3 -0.0 +0.1 +0.2 +0.1
carbon source D-Glucose (C) +0.1 -0.1 -0.1 +0.2 +0.1
nl-ccm; ambient oxygen NL-CCM; ambient oxygen +0.2 -0.1 +0.1 +0.1 -0.1
nitrogen source L-Glutamine (N); RCH2 media; no shaking -0.2 -0.1 -0.0 +0.6 -0.1
mixed community NL-CCM; Mixed culture; Sphingobium sp. HT1-2 2:1 starting OD to Azospirillum -0.1 -0.1 +0.1 +0.3 +0.1
nitrogen source L-Serine (N); ShewMM media; no shaking -0.2 +0.1 +0.1 +0.4 -0.0
mixed community NL-CCM; Mixed culture; Sphingobium sp. HT1-2 2:1 starting OD to Azospirillum +0.3 +0.0 -0.1 +0.3 -0.0
carbon source NLDM_metabolites (C) -0.1 -0.1 +0.2 +0.5 -0.0
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