Fitness for 5 genes in Rahnella sp. WP5

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500 ntEX31_RS13060 and EX31_RS13065 are separated by 42 nucleotidesEX31_RS13065 and EX31_RS13070 are separated by 1 nucleotidesEX31_RS13070 and EX31_RS13075 are separated by 190 nucleotidesEX31_RS13075 and EX31_RS13080 are separated by 658 nucleotides EX31_RS13060: EX31_RS13060 - flavodoxin, at 39,105 to 39,554 _RS13060 EX31_RS13065: EX31_RS13065 - tRNA pseudouridine(65) synthase TruC, at 39,597 to 40,376 _RS13065 EX31_RS13070: EX31_RS13070 - YqcC family protein, at 40,378 to 40,692 _RS13070 EX31_RS13075: EX31_RS13075 - MFS transporter, at 40,883 to 42,121 _RS13075 EX31_RS13080: EX31_RS13080 - SecY-interacting protein, at 42,780 to 43,331 _RS13080
Group Condition EX31_RS13060 EX31_RS13065 EX31_RS13070 EX31_RS13075 EX31_RS13080
mgl MGL +0.1 -0.2 -0.5 -0.0 -0.1
mixed community NL-CCM; Mixed culture; Sphingobium sp. WW5 2:1 starting OD to Azospirillum +0.1 -0.1 -0.3 -0.1 -0.0
mixed community NL-CCM; Mixed culture; Herbiconiux sp. 11RBC 2:1 starting OD to Azospirillum +0.3 -0.0 -0.4 -0.1 -0.1
nf_with10percent_fulln NF_with10percent_fullN +0.1 +0.1 -0.2 +0.0 -0.3
nf_with_fulln NF_with_fullN +0.1 +0.1 -0.4 +0.1 -0.2
nf_with10percent_fulln NF_with10percent_fullN -0.0 +0.2 -0.3 +0.1 -0.2
nf_with10percent_fulln NF_with10percent_fullN +0.2 +0.1 -0.3 +0.1 -0.4
nf_with_fulln NF_with_fullN -0.0 +0.2 -0.3 +0.1 -0.2
nl-ccm; ambient oxygen NL-CCM; ambient oxygen +0.1 +0.1 -0.3 +0.1 -0.3
nitrogen source Ammonium chloride (N); RCH2 media; no shaking -0.0 -0.0 +0.3 -0.3 -0.1
carbon source D,L-Lactate (C) +0.0 -0.0 +0.3 -0.2 -0.1
nitrogen source L-Serine (N); RCH2 media; shaking +0.2 -0.1 +0.3 -0.3 -0.2
nitrogen source Ammonium chloride (N); ShewMM media; shaking +0.1 -0.1 +0.3 -0.2 +0.1
nf_with_fulln NF_with_fullN +0.0 +0.2 -0.2 +0.2 -0.2
nf_with_fulln NF_with_fullN -0.0 +0.2 -0.1 +0.2 -0.1
nf_with_fulln NF_with_fullN -0.1 +0.2 -0.0 +0.2 -0.2
mixed community NL-CCM; Mixed culture; Herbiconiux sp. 11RBC 2:1 starting OD to Azospirillum +0.5 -0.0 -0.2 -0.0 -0.0
carbon source Sucrose (C) -0.0 +0.1 +0.3 +0.2 -0.3
nl-ccm_agar NL-CCM_agar +0.6 -0.0 -0.2 +0.0 -0.2
nitrogen source L-Serine (N); RCH2 media; no shaking +0.2 +0.0 +0.2 +0.0 -0.2
nln NLN +0.3 +0.1 +0.2 +0.1 -0.3
nitrogen source Ammonium chloride (N); ShewMM media; shaking -0.1 -0.0 +0.6 -0.1 -0.0
nl-ccm_agar NL-CCM_agar +0.6 -0.0 -0.1 -0.1 -0.1
nitrogen source L-Serine (N); ShewMM media; no shaking -0.1 +0.2 +0.3 -0.1 +0.1
nln NLN +0.4 +0.1 -0.1 +0.1 -0.1
mixed community NL-CCM; Mixed culture; Herbiconiux sp. 11RBC 2:1 starting OD to Azospirillum +0.6 -0.1 -0.0 -0.1 +0.0
nl-ccm_agar NL-CCM_agar +0.5 +0.0 -0.2 +0.0 +0.1
nl-ccm_agar NL-CCM_agar +0.5 +0.1 +0.1 -0.1 -0.1
nitrogen source Ammonium chloride (N); RCH2 media; no shaking +0.2 -0.0 +0.5 -0.1 +0.1
mixed community NL-CCM; Mixed culture; Herbiconiux sp. 11RBC 2:1 starting OD to Azospirillum +0.5 +0.0 +0.1 -0.1 +0.1
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