Fitness for 5 genes in Rahnella sp. WP5

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500 ntEX31_RS13055 and EX31_RS13060 are separated by 93 nucleotidesEX31_RS13060 and EX31_RS13065 are separated by 42 nucleotidesEX31_RS13065 and EX31_RS13070 are separated by 1 nucleotidesEX31_RS13070 and EX31_RS13075 are separated by 190 nucleotides EX31_RS13055: EX31_RS13055 - DUF3461 family protein, at 38,622 to 39,011 _RS13055 EX31_RS13060: EX31_RS13060 - flavodoxin, at 39,105 to 39,554 _RS13060 EX31_RS13065: EX31_RS13065 - tRNA pseudouridine(65) synthase TruC, at 39,597 to 40,376 _RS13065 EX31_RS13070: EX31_RS13070 - YqcC family protein, at 40,378 to 40,692 _RS13070 EX31_RS13075: EX31_RS13075 - MFS transporter, at 40,883 to 42,121 _RS13075
Group Condition EX31_RS13055 EX31_RS13060 EX31_RS13065 EX31_RS13070 EX31_RS13075
mixed community NL-CCM; Mixed culture; Sphingobium sp. HT1-2 2:1 starting OD to Azospirillum -0.2 +0.2 +0.0 -0.3 -0.0
mixed community NL-CCM; Mixed culture; Herbiconiux sp. 11RBC 2:1 starting OD to Azospirillum +0.0 +0.3 -0.0 -0.4 -0.1
mixed community NL-CCM; Mixed culture; Herbiconiux sp. 11RBC 2:1 starting OD to Azospirillum -0.1 +0.5 -0.0 -0.2 -0.0
nf_with_fulln NF_with_fullN -0.1 +0.0 +0.2 -0.2 +0.2
nitrogen source Ammonium chloride (N); RCH2 media; no shaking +0.2 -0.0 -0.0 +0.3 -0.3
nitrogen source L-Glutamine (N); ShewMM media; no shaking +0.3 +0.1 +0.0 +0.2 -0.3
nitrogen source Ammonium chloride (N); ShewMM media; shaking +0.3 +0.1 -0.1 +0.3 -0.2
nitrogen source L-Serine (N); ShewMM media; no shaking +0.4 -0.0 +0.0 +0.2 -0.2
nitrogen source L-Serine (N); RCH2 media; shaking +0.2 +0.2 -0.1 +0.3 -0.3
nln NLN -0.2 +0.3 +0.1 +0.2 +0.1
nitrogen source Ammonium chloride (N); ShewMM media; no shaking +0.3 +0.1 -0.0 +0.3 -0.2
carbon source D,L-Lactate (C) +0.4 +0.0 -0.0 +0.3 -0.2
nl-ccm_agar NL-CCM_agar +0.0 +0.6 -0.0 -0.1 -0.1
nitrogen source Ammonium chloride (N); ShewMM media; shaking +0.2 -0.1 -0.0 +0.6 -0.1
nl-ccm_agar NL-CCM_agar +0.1 +0.6 -0.0 -0.2 +0.0
mixed community NL-CCM; Mixed culture; Herbiconiux sp. 11RBC 2:1 starting OD to Azospirillum +0.1 +0.6 -0.1 -0.0 -0.1
nl-ccm_agar NL-CCM_agar +0.2 +0.5 +0.0 -0.2 +0.0
nitrogen source L-Serine (N); ShewMM media; no shaking +0.3 -0.1 +0.2 +0.3 -0.1
nitrogen source L-Glutamine (N); ShewMM media; no shaking +0.3 +0.2 -0.0 +0.3 -0.1
nln NLN +0.2 +0.4 +0.1 -0.1 +0.1
nitrogen source L-Serine (N); RCH2 media; no shaking +0.4 +0.0 -0.0 +0.3 -0.1
nitrogen source Ammonium chloride (N); ShewMM media; no shaking +0.6 -0.1 +0.1 +0.2 -0.1
nitrogen source L-Glutamine (N); ShewMM media; no shaking +0.6 +0.2 -0.0 +0.1 -0.2
nitrogen source Ammonium chloride (N); ShewMM media; no shaking +0.2 +0.1 +0.0 +0.4 -0.1
carbon source NLDM_metabolites (C) +0.6 +0.0 +0.1 -0.2 +0.2
carbon source Sucrose (C) +0.3 -0.0 +0.1 +0.3 +0.2
mixed community NL-CCM; Mixed culture; Sphingobium sp. HT1-2 2:1 starting OD to Azospirillum +0.4 +0.2 -0.1 +0.3 +0.0
carbon source Sucrose (C) +0.6 +0.0 +0.0 +0.1 +0.1
carbon source D-Xylose (C) +0.6 +0.1 +0.1 -0.0 +0.1
nitrogen source Ammonium chloride (N); RCH2 media; no shaking +0.4 +0.2 -0.0 +0.5 -0.1
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EX31_RS13060
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EX31_RS13070
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EX31_RS13075
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