Fitness for 5 genes in Rahnella sp. WP5

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500 ntEX31_RS13035 and EX31_RS13040 are separated by 367 nucleotidesEX31_RS13040 and EX31_RS13045 are separated by 110 nucleotidesEX31_RS13045 and EX31_RS13050 are separated by 46 nucleotidesEX31_RS13050 and EX31_RS13055 are separated by 144 nucleotides EX31_RS13035: EX31_RS13035 - 30S ribosomal protein S2, at 32,921 to 33,646 _RS13035 EX31_RS13040: EX31_RS13040 - type I methionyl aminopeptidase, at 34,014 to 34,805 _RS13040 EX31_RS13045: EX31_RS13045 - bifunctional uridylyltransferase/uridylyl-removing protein GlnD, at 34,916 to 37,606 _RS13045 EX31_RS13050: EX31_RS13050 - 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase, at 37,653 to 38,477 _RS13050 EX31_RS13055: EX31_RS13055 - DUF3461 family protein, at 38,622 to 39,011 _RS13055
Group Condition EX31_RS13035 EX31_RS13040 EX31_RS13045 EX31_RS13050 EX31_RS13055
carbon source casaminos (C) N.D. -0.1 -3.2 N.D. +0.0
nitrogen source L-Serine (N); RCH2 media; no shaking N.D. -0.1 -3.5 N.D. +0.4
nitrogen source L-Serine (N); RCH2 media; no shaking N.D. -0.1 -3.5 N.D. +0.4
nitrogen source L-Serine (N); ShewMM media; shaking N.D. -0.0 -3.1 N.D. +0.1
nitrogen source L-Serine (N); RCH2 media; no shaking N.D. -0.0 -3.2 N.D. +0.2
nitrogen source L-Serine (N); ShewMM media; shaking N.D. -0.1 -2.9 N.D. +0.1
nitrogen source L-Serine (N); ShewMM media; shaking N.D. +0.0 -2.9 N.D. +0.0
nitrogen source L-Serine (N); RCH2 media; shaking N.D. -0.0 -2.9 N.D. +0.1
nitrogen source L-Serine (N); RCH2 media; shaking N.D. -0.0 -3.0 N.D. +0.2
nitrogen source L-Serine (N); ShewMM media; no shaking N.D. -0.3 -2.8 N.D. +0.4
nitrogen source L-Serine (N); ShewMM media; no shaking N.D. -0.2 -2.9 N.D. +0.3
mixed community NL-CCM; Mixed culture; Herbiconiux sp. 11RBC 2:1 starting OD to Azospirillum N.D. -0.2 -2.4 N.D. -0.1
nitrogen source L-Serine (N); RCH2 media; shaking N.D. -0.1 -2.7 N.D. +0.1
nitrogen source L-Serine (N); ShewMM media; no shaking N.D. +0.0 -2.8 N.D. +0.4
nitrogen source Ammonium chloride (N); RCH2 media; no shaking N.D. +0.0 -2.1 N.D. -0.1
carbon source casaminos (C) N.D. +0.2 -2.9 N.D. +0.5
nl-ccm NL-CCM N.D. -0.1 -2.1 N.D. -0.1
nf_with_fulln NF_with_fullN N.D. +0.1 -2.1 N.D. -0.2
nln NLN N.D. +0.0 -2.0 N.D. -0.2
nl-ccm NL-CCM N.D. +0.1 -2.1 N.D. -0.1
nf_with10percent_fulln NF_with10percent_fullN N.D. +0.0 -2.2 N.D. +0.0
nf_with_fulln NF_with_fullN N.D. +0.0 -2.0 N.D. -0.1
nitrogen source Ammonium chloride (N); RCH2 media; no shaking N.D. -0.0 -2.3 N.D. +0.2
carbon source D-Xylose (C) N.D. +0.2 -2.3 N.D. +0.1
nf_with_fulln NF_with_fullN N.D. +0.2 -2.1 N.D. +0.0
nitrogen source Ammonium chloride (N); RCH2 media; no shaking N.D. +0.2 -2.5 N.D. +0.4
nf_with10percent_fulln NF_with10percent_fullN N.D. +0.1 -2.0 N.D. +0.1
mgl MGL N.D. +0.1 -1.9 N.D. +0.3
carbon source D-Xylose (C) N.D. -0.0 -2.0 N.D. +0.6
nitrogen source Ammonium chloride (N); ShewMM media; no shaking N.D. +0.1 -1.6 N.D. +0.6
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