Fitness for 5 genes in Rahnella sp. WP5

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500 ntEX31_RS12315 and EX31_RS12320 are separated by 227 nucleotidesEX31_RS12320 and EX31_RS12325 are separated by 147 nucleotidesEX31_RS12325 and EX31_RS12330 are separated by 760 nucleotidesEX31_RS12330 and EX31_RS12335 are separated by 399 nucleotides EX31_RS12315: EX31_RS12315 - ribosome-associated protein, at 134,293 to 134,844 _RS12315 EX31_RS12320: EX31_RS12320 - metalloprotease PmbA, at 135,072 to 136,412 _RS12320 EX31_RS12325: EX31_RS12325 - cytochrome b562, at 136,560 to 136,946 _RS12325 EX31_RS12330: EX31_RS12330 - nucleoside diphosphate kinase regulator, at 137,707 to 138,117 _RS12330 EX31_RS12335: EX31_RS12335 - PRD domain-containing protein, at 138,517 to 138,867 _RS12335
Group Condition EX31_RS12315 EX31_RS12320 EX31_RS12325 EX31_RS12330 EX31_RS12335
nitrogen source Ammonium chloride (N); RCH2 media; no shaking -1.1 -0.1 -0.3 -0.2 -0.3
nitrogen source Ammonium chloride (N); RCH2 media; no shaking -0.9 -0.1 +0.1 -0.2 -0.6
nitrogen source L-Glutamine (N); ShewMM media; no shaking -1.0 -0.2 +0.0 -0.0 -0.5
carbon source NLDM_metabolites (C) -0.9 +0.0 -0.0 +0.2 -0.8
nitrogen source L-Glutamine (N); RCH2 media; no shaking -1.0 -0.1 -0.2 -0.1 -0.2
nitrogen source L-Serine (N); RCH2 media; no shaking -0.4 -0.1 -0.5 -0.2 -0.1
carbon source Sucrose (C) -0.4 +0.0 -0.6 -0.1 -0.3
nitrogen source L-Glutamine (N); RCH2 media; no shaking -0.6 -0.0 +0.2 -0.3 -0.6
nitrogen source Ammonium chloride (N); ShewMM media; no shaking -0.8 +0.0 -0.2 -0.2 -0.3
nitrogen source L-Glutamine (N); RCH2 media; no shaking -1.0 -0.2 +0.3 -0.2 -0.1
carbon source casaminos (C) -0.3 +0.0 -0.9 +0.1 -0.1
nitrogen source Ammonium chloride (N); RCH2 media; no shaking -1.1 -0.1 +0.4 +0.0 -0.2
carbon source D-Mannitol (C) -0.7 -0.0 -0.3 +0.2 -0.2
nitrogen source L-Glutamine (N); ShewMM media; no shaking -0.6 -0.2 +0.3 -0.1 -0.4
nitrogen source Ammonium chloride (N); ShewMM media; no shaking -0.7 +0.0 +0.4 -0.2 -0.2
nitrogen source Ammonium chloride (N); ShewMM media; no shaking -0.6 -0.0 +0.3 -0.1 -0.2
mixed community NL-CCM; Mixed culture; Sphingobium sp. HT1-2 2:1 starting OD to Azospirillum -0.7 -0.1 +0.3 -0.1 +0.1
carbon source D-Mannitol (C) -0.3 +0.2 -0.6 +0.2 +0.0
nitrogen source L-Glutamine (N); ShewMM media; shaking -0.5 -0.1 +0.4 -0.1 -0.1
nitrogen source Ammonium chloride (N); RCH2 media; shaking -0.2 -0.1 +0.4 +0.1 -0.5
carbon source D,L-Lactate (C) +0.2 +0.1 -0.4 +0.1 +0.5
mixed community NL-CCM; Mixed culture; Herbiconiux sp. 11RBC 2:1 starting OD to Azospirillum -0.4 +0.0 +0.5 +0.1 +0.3
nl-ccm; high oxygen NL-CCM; high oxygen +0.2 -0.1 -0.2 +0.1 +0.8
nl-ccm; high oxygen NL-CCM; high oxygen +0.2 -0.0 +0.2 -0.1 +0.8
nl-ccm; ambient oxygen NL-CCM; ambient oxygen +0.1 -0.2 -0.1 -0.2 +2.1
nl-ccm; ambient oxygen NL-CCM; ambient oxygen +0.1 -0.1 +0.0 -0.3 +2.3
nl-ccm; ambient oxygen NL-CCM; ambient oxygen -0.0 -0.1 -0.1 +0.0 +2.4
nl-ccm; ambient oxygen NL-CCM; ambient oxygen +0.1 -0.2 +0.1 +0.1 +2.2
nl-ccm; ambient oxygen NL-CCM; ambient oxygen -0.1 -0.1 +0.1 +0.1 +2.4
nl-ccm; ambient oxygen NL-CCM; ambient oxygen +0.3 -0.2 +0.0 -0.2 +2.6
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