Fitness for 5 genes in Rahnella sp. WP5

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500 ntEX31_RS12220 and EX31_RS12225 are separated by 18 nucleotidesEX31_RS12225 and EX31_RS12230 are separated by 316 nucleotidesEX31_RS12230 and EX31_RS12235 are separated by 355 nucleotidesEX31_RS12235 and EX31_RS12240 are separated by 255 nucleotides EX31_RS12220: EX31_RS12220 - protein-methionine-sulfoxide reductase heme-binding subunit MsrQ, at 110,269 to 110,871 _RS12220 EX31_RS12225: EX31_RS12225 - protein-methionine-sulfoxide reductase catalytic subunit MsrP, at 110,890 to 111,891 _RS12225 EX31_RS12230: EX31_RS12230 - RNase E specificity factor CsrD, at 112,208 to 114,142 _RS12230 EX31_RS12235: EX31_RS12235 - rod shape-determining protein, at 114,498 to 115,541 _RS12235 EX31_RS12240: EX31_RS12240 - rod shape-determining protein MreC, at 115,797 to 116,804 _RS12240
Group Condition EX31_RS12220 EX31_RS12225 EX31_RS12230 EX31_RS12235 EX31_RS12240
carbon source NLDM_metabolites (C) -0.7 -0.1 +0.1 N.D. -2.9
carbon source NLDM_metabolites (C) -0.2 -0.0 -0.1 N.D. -2.9
nf_with_fulln NF_with_fullN +0.3 +0.2 -0.8 N.D. -2.0
nitrogen source Ammonium chloride (N); RCH2 media; no shaking -0.0 +0.0 -0.6 N.D. -1.6
nl-ccm; high oxygen NL-CCM; high oxygen -0.1 +0.1 -0.1 N.D. -2.1
mixed community NL-CCM; Mixed culture; Sphingobium sp. HT1-2 2:1 starting OD to Azospirillum -0.0 +0.0 -0.5 N.D. -1.4
nln NLN +0.1 +0.1 -0.6 N.D. -1.4
nl-ccm NL-CCM +0.0 +0.0 -0.6 N.D. -1.2
nln NLN +0.2 +0.1 -0.7 N.D. -1.3
nf_with_fulln NF_with_fullN +0.2 +0.1 -0.8 N.D. -1.1
nf_with_fulln NF_with_fullN +0.3 +0.2 -0.8 N.D. -1.2
nln NLN +0.3 +0.1 -0.6 N.D. -1.3
nl-ccm NL-CCM -0.0 +0.1 -0.6 N.D. -0.8
nl-ccm NL-CCM +0.1 +0.0 -0.6 N.D. -0.8
nl-ccm; ambient oxygen NL-CCM; ambient oxygen +0.1 +0.2 +0.0 N.D. -1.6
nf_with_fulln NF_with_fullN +0.4 +0.1 -0.8 N.D. -1.0
nf_with_fulln NF_with_fullN +0.3 +0.2 -0.8 N.D. -0.9
mixed community NL-CCM; Mixed culture; Sphingobium sp. HT1-2 2:1 starting OD to Azospirillum +0.1 +0.0 -0.5 N.D. -0.8
nf_with_fulln NF_with_fullN +0.3 +0.1 -0.8 N.D. -0.7
nf_with10percent_fulln NF_with10percent_fullN +0.2 +0.1 -0.6 N.D. -0.7
nf_with10percent_fulln NF_with10percent_fullN +0.1 +0.1 -0.5 N.D. -0.7
nln NLN +0.2 +0.2 -0.6 N.D. -0.6
nitrogen source L-Glutamine (N); RCH2 media; no shaking +0.3 +0.1 -0.5 N.D. -0.7
carbon source Sucrose (C) +0.1 +0.1 -0.5 N.D. +0.8
carbon source D-Xylose (C) -0.0 +0.1 -0.4 N.D. +0.9
nitrogen source Ammonium chloride (N); RCH2 media; shaking +0.2 -0.0 -0.4 N.D. +0.9
carbon source D-Mannitol (C) +0.3 +0.0 -0.5 N.D. +0.8
nitrogen source L-Serine (N); ShewMM media; no shaking +0.1 -0.1 -0.2 N.D. +1.0
nitrogen source L-Glutamine (N); RCH2 media; shaking +0.2 +0.0 -0.2 N.D. +1.1
carbon source D,L-Lactate (C) +0.1 -0.0 +0.4 N.D. +1.0
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EX31_RS12220
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EX31_RS12225
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EX31_RS12235
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EX31_RS12240
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