Fitness for 5 genes in Rahnella sp. WP5

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500 ntEX31_RS12120 and EX31_RS12125 are separated by 58 nucleotidesEX31_RS12125 and EX31_RS12130 are separated by 144 nucleotidesEX31_RS12130 and EX31_RS12135 overlap by 8 nucleotidesEX31_RS12135 and EX31_RS12140 are separated by 598 nucleotides EX31_RS12120: EX31_RS12120 - Na+/H+ antiporter, at 91,165 to 92,814 _RS12120 EX31_RS12125: EX31_RS12125 - LysR family transcriptional regulator, at 92,873 to 93,751 _RS12125 EX31_RS12130: EX31_RS12130 - CidA/LrgA family protein, at 93,896 to 94,318 _RS12130 EX31_RS12135: EX31_RS12135 - LrgB family protein, at 94,311 to 95,000 _RS12135 EX31_RS12140: EX31_RS12140 - amino acid ABC transporter ATP-binding protein, at 95,599 to 96,360 _RS12140
Group Condition EX31_RS12120 EX31_RS12125 EX31_RS12130 EX31_RS12135 EX31_RS12140
nitrogen source L-Serine (N); RCH2 media; no shaking +0.0 -0.2 -0.0 -0.1 -0.6
nitrogen source L-Serine (N); RCH2 media; shaking -0.1 -0.4 -0.0 +0.1 -0.3
nitrogen source L-Serine (N); ShewMM media; shaking -0.1 -0.1 -0.1 +0.1 -0.4
nitrogen source L-Serine (N); ShewMM media; no shaking -0.1 -0.2 +0.1 -0.1 -0.4
nitrogen source L-Serine (N); ShewMM media; no shaking -0.1 -0.1 -0.0 +0.1 -0.5
nitrogen source L-Serine (N); ShewMM media; shaking -0.2 -0.3 +0.0 +0.1 -0.3
nitrogen source Ammonium chloride (N); RCH2 media; shaking -0.1 -0.1 -0.0 -0.2 -0.2
nitrogen source L-Serine (N); RCH2 media; no shaking -0.2 -0.4 +0.1 +0.1 -0.2
mixed community NL-CCM; Mixed culture; Sphingobium sp. HT1-2 2:1 starting OD to Azospirillum -0.1 -0.2 -0.1 -0.2 +0.1
nitrogen source L-Glutamine (N); RCH2 media; no shaking -0.0 -0.1 +0.1 -0.2 -0.3
nitrogen source Ammonium chloride (N); ShewMM media; shaking -0.1 -0.2 +0.0 +0.1 -0.2
nitrogen source L-Serine (N); ShewMM media; no shaking -0.1 -0.2 +0.1 +0.0 -0.4
nitrogen source Ammonium chloride (N); ShewMM media; no shaking -0.1 -0.4 +0.2 +0.1 -0.1
nitrogen source L-Serine (N); RCH2 media; no shaking -0.1 -0.1 +0.2 +0.0 -0.4
nitrogen source L-Serine (N); ShewMM media; shaking -0.2 +0.1 +0.0 +0.0 -0.3
nitrogen source Ammonium chloride (N); RCH2 media; shaking -0.0 -0.2 -0.1 -0.2 +0.2
nl-ccm_agar NL-CCM_agar -0.0 +0.1 -0.1 -0.3 -0.1
mixed community NL-CCM; Mixed culture; Sphingobium sp. WW5 2:1 starting OD to Azospirillum +0.0 -0.2 +0.1 -0.3 +0.1
carbon source NLDM_metabolites (C) -0.1 -0.5 -0.1 +0.2 +0.1
nf_with_fulln NF_with_fullN +0.1 -0.3 +0.2 -0.1 +0.2
nl-ccm; high oxygen NL-CCM; high oxygen +0.2 -0.1 +0.1 -0.1 -0.1
nl-ccm; high oxygen NL-CCM; high oxygen +0.1 -0.1 +0.2 +0.0 -0.1
carbon source D,L-Lactate (C) -0.0 +0.4 +0.1 -0.1 -0.2
nf_with_fulln NF_with_fullN +0.0 -0.3 +0.1 +0.1 +0.2
nf_with_fulln NF_with_fullN +0.1 -0.3 +0.2 +0.1 +0.1
nf_with_fulln NF_with_fullN +0.1 -0.2 +0.1 +0.1 +0.1
nf_with_fulln NF_with_fullN +0.1 -0.2 +0.2 +0.1 +0.2
nf_with_fulln NF_with_fullN +0.1 -0.1 +0.2 +0.1 +0.2
carbon source D,L-Lactate (C) +0.1 +0.3 +0.1 +0.2 -0.0
nf_with10percent_fulln NF_with10percent_fullN +0.2 +0.1 +0.1 +0.1 +0.2
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EX31_RS12120
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EX31_RS12125
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EX31_RS12140
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