Fitness for 5 genes in Rahnella sp. WP5

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500 ntEX31_RS12060 and EX31_RS12065 are separated by 35 nucleotidesEX31_RS12065 and EX31_RS12070 are separated by 165 nucleotidesEX31_RS12070 and EX31_RS12075 are separated by 447 nucleotidesEX31_RS12075 and EX31_RS12080 are separated by 27 nucleotides EX31_RS12060: EX31_RS12060 - GNAT family N-acetyltransferase, at 76,923 to 77,456 _RS12060 EX31_RS12065: EX31_RS12065 - glutathione S-transferase, at 77,492 to 78,115 _RS12065 EX31_RS12070: EX31_RS12070 - NAD-dependent epimerase/dehydratase family protein, at 78,281 to 79,396 _RS12070 EX31_RS12075: EX31_RS12075 - RIO-like kinase, at 79,844 to 80,701 _RS12075 EX31_RS12080: EX31_RS12080 - molybdate ABC transporter substrate-binding protein, at 80,729 to 81,469 _RS12080
Group Condition EX31_RS12060 EX31_RS12065 EX31_RS12070 EX31_RS12075 EX31_RS12080
mgl MGL -0.1 -0.5 -0.1 -0.1 -0.2
carbon source casaminos (C) -0.1 -0.2 -0.1 -0.2 -0.3
mixed community NL-CCM; Mixed culture; Sphingobium sp. HT1-2 2:1 starting OD to Azospirillum -0.0 -0.2 -0.1 -0.1 -0.2
nitrogen source Ammonium chloride (N); ShewMM media; shaking -0.1 -0.1 -0.1 -0.0 -0.2
carbon source D,L-Lactate (C) +0.1 -0.4 -0.1 -0.2 -0.1
mixed community NL-CCM; Mixed culture; Herbiconiux sp. 11RBC 2:1 starting OD to Azospirillum -0.1 -0.2 +0.0 +0.0 -0.3
mixed community NL-CCM; Mixed culture; Sphingobium sp. HT1-2 2:1 starting OD to Azospirillum -0.3 -0.2 +0.1 -0.1 -0.1
carbon source D-Mannitol (C) +0.0 +0.2 -0.0 -0.2 -0.4
carbon source D-Xylose (C) -0.0 -0.0 +0.1 -0.2 -0.2
nitrogen source L-Glutamine (N); RCH2 media; shaking -0.1 -0.4 +0.0 -0.1 +0.1
mixed community NL-CCM; Mixed culture; Herbiconiux sp. 11RBC 2:1 starting OD to Azospirillum -0.4 +0.0 -0.0 +0.1 -0.1
nitrogen source L-Serine (N); RCH2 media; no shaking -0.0 -0.5 -0.2 +0.2 +0.1
nitrogen source L-Serine (N); ShewMM media; no shaking +0.0 -0.5 -0.0 +0.0 +0.3
nitrogen source L-Glutamine (N); ShewMM media; shaking -0.1 -0.2 -0.2 +0.1 +0.0
nitrogen source Ammonium chloride (N); RCH2 media; no shaking -0.1 -0.4 -0.1 +0.1 +0.2
nitrogen source Ammonium chloride (N); RCH2 media; shaking +0.1 -0.4 -0.1 +0.1 -0.0
nl-ccm; ambient oxygen NL-CCM; ambient oxygen +0.1 -0.2 -0.1 +0.0 -0.1
nitrogen source L-Serine (N); RCH2 media; shaking -0.3 +0.1 -0.0 +0.1 -0.1
nitrogen source L-Glutamine (N); ShewMM media; no shaking -0.0 -0.4 +0.0 +0.2 +0.0
nitrogen source Ammonium chloride (N); RCH2 media; shaking -0.1 -0.2 -0.3 +0.2 +0.2
nitrogen source Ammonium chloride (N); ShewMM media; no shaking +0.0 -0.3 -0.1 +0.1 +0.2
nitrogen source L-Serine (N); ShewMM media; shaking +0.2 -0.2 -0.1 +0.1 +0.0
nitrogen source Ammonium chloride (N); ShewMM media; no shaking +0.1 -0.3 +0.0 +0.2 +0.1
nl-ccm; ambient oxygen NL-CCM; ambient oxygen +0.2 +0.1 -0.2 +0.1 -0.1
nitrogen source Ammonium chloride (N); RCH2 media; no shaking +0.2 -0.4 -0.0 +0.2 +0.2
nitrogen source L-Glutamine (N); RCH2 media; no shaking +0.1 -0.2 -0.0 +0.2 +0.1
carbon source NLDM_metabolites (C) +0.1 +0.4 +0.1 -0.3 -0.2
nitrogen source L-Serine (N); RCH2 media; no shaking +0.3 -0.1 -0.1 +0.2 +0.0
carbon source NLDM_metabolites (C) -0.4 +0.4 +0.2 +0.0 -0.1
nitrogen source Ammonium chloride (N); ShewMM media; shaking -0.0 +0.2 -0.0 +0.2 +0.2
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EX31_RS12060
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EX31_RS12065
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EX31_RS12080
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