Fitness for 5 genes in Rahnella sp. WP5

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500 ntEX31_RS12020 and EX31_RS12025 are separated by 125 nucleotidesEX31_RS12025 and EX31_RS12030 are separated by 37 nucleotidesEX31_RS12030 and EX31_RS12035 are separated by 54 nucleotidesEX31_RS12035 and EX31_RS12040 are separated by 121 nucleotides EX31_RS12020: EX31_RS12020 - FAD-dependent urate hydroxylase HpxO, at 69,146 to 70,303 _RS12020 EX31_RS12025: EX31_RS12025 - hypothetical protein, at 70,429 to 72,015 _RS12025 EX31_RS12030: EX31_RS12030 - hypothetical protein, at 72,053 to 72,538 _RS12030 EX31_RS12035: EX31_RS12035 - LysR family transcriptional regulator, at 72,593 to 73,495 _RS12035 EX31_RS12040: EX31_RS12040 - SDR family oxidoreductase, at 73,617 to 74,357 _RS12040
Group Condition EX31_RS12020 EX31_RS12025 EX31_RS12030 EX31_RS12035 EX31_RS12040
carbon source NLDM_metabolites (C) -0.4 -0.1 -0.8 +0.1 +0.1
nitrogen source L-Serine (N); ShewMM media; shaking -0.0 +0.0 -0.7 -0.2 -0.1
nitrogen source Ammonium chloride (N); RCH2 media; shaking -0.2 +0.1 -0.6 -0.1 -0.0
nl-ccm; vial NL-CCM; vial -0.1 -0.1 -0.5 -0.1 -0.1
mixed community NL-CCM; Mixed culture; Herbiconiux sp. 11RBC 2:1 starting OD to Azospirillum -0.2 -0.1 -0.3 -0.1 -0.1
mgl MGL -0.0 -0.1 -0.2 -0.2 -0.1
nitrogen source Ammonium chloride (N); ShewMM media; no shaking -0.0 +0.0 -0.4 -0.1 -0.1
nitrogen source L-Serine (N); RCH2 media; shaking -0.1 -0.0 -0.3 -0.2 -0.0
carbon source Sucrose (C) -0.2 -0.1 -0.1 -0.1 -0.0
mixed community NL-CCM; Mixed culture; Sphingobium sp. HT1-2 2:1 starting OD to Azospirillum -0.2 -0.1 -0.2 +0.0 -0.1
nl-ccm; low oxygen NL-CCM; low oxygen -0.0 -0.0 -0.4 +0.2 -0.0
nitrogen source L-Glutamine (N); ShewMM media; shaking -0.1 +0.1 -0.4 -0.1 +0.1
nln NLN +0.0 -0.1 -0.4 +0.2 -0.0
nf_with10percent_fulln NF_with10percent_fullN -0.1 -0.1 -0.2 +0.1 +0.1
mixed community NL-CCM; Mixed culture; Herbiconiux sp. 11RBC 2:1 starting OD to Azospirillum -0.1 -0.1 -0.2 -0.1 +0.2
nl-ccm; ambient oxygen NL-CCM; ambient oxygen -0.1 +0.0 -0.4 +0.1 +0.1
mixed community NL-CCM; Mixed culture; Herbiconiux sp. 11RBC 2:1 starting OD to Azospirillum -0.1 +0.1 -0.2 +0.1 +0.0
nl-ccm; ambient oxygen NL-CCM; ambient oxygen +0.1 -0.0 -0.4 +0.3 -0.0
nf_with10percent_fulln NF_with10percent_fullN +0.1 -0.1 -0.4 +0.2 +0.0
nitrogen source Ammonium chloride (N); RCH2 media; shaking -0.1 +0.1 +0.2 -0.2 -0.1
nf_with10percent_fulln NF_with10percent_fullN +0.1 -0.1 -0.3 +0.2 +0.0
mixed community NL-CCM; Mixed culture; Sphingobium sp. WW5 2:1 starting OD to Azospirillum -0.1 -0.2 +0.3 +0.0 -0.1
nitrogen source L-Serine (N); ShewMM media; shaking +0.1 +0.1 +0.1 -0.1 -0.2
nitrogen source Ammonium chloride (N); ShewMM media; shaking +0.1 +0.0 +0.2 -0.2 -0.1
nitrogen source Ammonium chloride (N); RCH2 media; no shaking -0.1 +0.1 +0.3 -0.2 -0.0
carbon source casaminos (C) -0.1 +0.0 +0.4 -0.2 -0.0
nl-ccm; high oxygen NL-CCM; high oxygen +0.1 -0.1 -0.2 +0.3 +0.1
mixed community NL-CCM; Mixed culture; Sphingobium sp. HT1-2 2:1 starting OD to Azospirillum +0.1 -0.1 +0.4 -0.0 -0.0
nl-ccm; high oxygen NL-CCM; high oxygen +0.1 -0.1 +0.4 +0.1 +0.1
nitrogen source Ammonium chloride (N); ShewMM media; shaking +0.1 +0.1 +0.5 -0.0 +0.1
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