Fitness for 5 genes in Rahnella sp. WP5

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500 ntEX31_RS12000 and EX31_RS12005 are separated by 100 nucleotidesEX31_RS12005 and EX31_RS12010 are separated by 206 nucleotidesEX31_RS12010 and EX31_RS12015 are separated by 610 nucleotidesEX31_RS12015 and EX31_RS12020 are separated by 300 nucleotides EX31_RS12000: EX31_RS12000 - amidohydrolase family protein, at 63,382 to 64,800 _RS12000 EX31_RS12005: EX31_RS12005 - LysR family transcriptional regulator, at 64,901 to 65,755 _RS12005 EX31_RS12010: EX31_RS12010 - cysteine protease, at 65,962 to 66,651 _RS12010 EX31_RS12015: EX31_RS12015 - metallophosphoesterase, at 67,262 to 68,845 _RS12015 EX31_RS12020: EX31_RS12020 - FAD-dependent urate hydroxylase HpxO, at 69,146 to 70,303 _RS12020
Group Condition EX31_RS12000 EX31_RS12005 EX31_RS12010 EX31_RS12015 EX31_RS12020
carbon source NLDM_metabolites (C) -0.0 +0.3 -1.0 +0.1 -0.4
nitrogen source L-Glutamine (N); ShewMM media; shaking -0.1 -0.4 -0.0 -0.2 -0.1
mixed community NL-CCM; Mixed culture; Sphingobium sp. HT1-2 2:1 starting OD to Azospirillum -0.0 -0.4 -0.1 +0.1 -0.2
nitrogen source L-Glutamine (N); RCH2 media; shaking -0.0 -0.3 -0.3 +0.1 -0.1
nitrogen source L-Serine (N); ShewMM media; shaking -0.1 -0.2 -0.0 -0.1 -0.0
nitrogen source Ammonium chloride (N); ShewMM media; shaking -0.1 -0.4 -0.0 -0.1 +0.1
nl-ccm; ambient oxygen NL-CCM; ambient oxygen +0.1 +0.1 -0.5 -0.1 +0.0
nl-ccm; ambient oxygen NL-CCM; ambient oxygen +0.2 +0.1 -0.6 -0.1 +0.0
nitrogen source Ammonium chloride (N); RCH2 media; no shaking -0.0 -0.5 +0.1 -0.1 +0.1
nl-ccm; high oxygen NL-CCM; high oxygen +0.1 -0.0 -0.3 +0.0 -0.1
nl-ccm; ambient oxygen NL-CCM; ambient oxygen +0.2 +0.0 -0.4 -0.2 +0.1
carbon source Sucrose (C) -0.1 -0.3 +0.5 -0.1 -0.2
nl-ccm; high oxygen NL-CCM; high oxygen +0.1 +0.0 -0.4 -0.1 +0.1
nl-ccm; ambient oxygen NL-CCM; ambient oxygen +0.1 +0.1 -0.4 -0.1 +0.1
nitrogen source Ammonium chloride (N); RCH2 media; shaking -0.1 +0.1 +0.2 -0.1 -0.1
nitrogen source L-Glutamine (N); RCH2 media; shaking -0.2 -0.1 +0.3 -0.0 +0.1
mixed community NL-CCM; Mixed culture; Sphingobium sp. HT1-2 2:1 starting OD to Azospirillum +0.0 -0.2 +0.3 -0.1 -0.0
nitrogen source L-Glutamine (N); ShewMM media; no shaking +0.1 -0.2 +0.3 +0.1 -0.2
carbon source NLDM_metabolites (C) -0.1 +0.3 +0.2 -0.0 -0.1
nitrogen source L-Serine (N); ShewMM media; no shaking -0.0 -0.2 +0.3 -0.0 +0.0
mgl MGL +0.0 -0.3 +0.1 +0.1 +0.2
carbon source D,L-Lactate (C) -0.2 +0.0 +0.3 +0.0 +0.1
carbon source Sucrose (C) -0.1 +0.1 +0.3 -0.0 +0.1
carbon source D-Mannitol (C) -0.0 +0.1 +0.4 -0.0 -0.1
carbon source D-Xylose (C) -0.0 +0.3 +0.3 +0.0 -0.1
nl-ccm NL-CCM +0.1 +0.1 +0.2 +0.1 +0.1
mgl MGL +0.0 +0.1 +0.3 +0.1 +0.0
nl-ccm_agar NL-CCM_agar +0.2 -0.0 +0.1 +0.1 +0.1
mgl MGL +0.1 +0.0 +0.4 +0.0 +0.1
carbon source casaminos (C) +0.2 +0.1 +0.5 -0.1 -0.1
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EX31_RS12000
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EX31_RS12005
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EX31_RS12020
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