Fitness for 5 genes in Rahnella sp. WP5

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500 ntEX31_RS11615 and EX31_RS11620 are separated by 20 nucleotidesEX31_RS11620 and EX31_RS11625 overlap by 1 nucleotidesEX31_RS11625 and EX31_RS11630 are separated by 134 nucleotidesEX31_RS11630 and EX31_RS11635 are separated by 230 nucleotides EX31_RS11615: EX31_RS11615 - fumarylacetoacetate hydrolase family protein, at 264,004 to 264,693 _RS11615 EX31_RS11620: EX31_RS11620 - hypothetical protein, at 264,714 to 265,520 _RS11620 EX31_RS11625: EX31_RS11625 - hypothetical protein, at 265,520 to 265,717 _RS11625 EX31_RS11630: EX31_RS11630 - L-asparagine permease, at 265,852 to 267,333 _RS11630 EX31_RS11635: EX31_RS11635 - transcriptional antiterminator BglG, at 267,564 to 268,412 _RS11635
Group Condition EX31_RS11615 EX31_RS11620 EX31_RS11625 EX31_RS11630 EX31_RS11635
nl-ccm NL-CCM -0.4 -0.1 -1.0 -0.1 -0.8
nitrogen source L-Serine (N); RCH2 media; no shaking -0.4 -0.1 -2.0 -0.1 +0.2
mixed community NL-CCM; Mixed culture; Herbiconiux sp. 11RBC 2:1 starting OD to Azospirillum -0.3 -0.1 -1.8 -0.1 +0.0
nitrogen source Ammonium chloride (N); ShewMM media; shaking +0.2 -0.2 -1.1 -0.1 -0.8
mixed community NL-CCM; Mixed culture; Sphingobium sp. WW5 2:1 starting OD to Azospirillum -0.1 +0.1 -1.8 -0.3 +0.3
carbon source D,L-Lactate (C) +0.1 -0.2 -1.6 +0.4 -0.5
nitrogen source L-Glutamine (N); RCH2 media; no shaking -0.3 -0.0 -1.0 -0.7 +0.1
nf_with10percent_fulln NF_with10percent_fullN -0.5 -0.3 -0.4 +0.1 -0.7
nl-ccm; high oxygen NL-CCM; high oxygen -0.2 +0.1 -2.0 -0.0 +0.4
nitrogen source L-Serine (N); ShewMM media; shaking -0.0 -0.1 -1.9 -0.2 +0.5
nf_with_fulln NF_with_fullN -0.1 -0.2 -0.5 +0.1 -1.0
mixed community NL-CCM; Mixed culture; Sphingobium sp. WW5 2:1 starting OD to Azospirillum -0.1 +0.0 -1.4 +0.0 -0.1
nf_with10percent_fulln NF_with10percent_fullN -0.5 -0.2 -0.4 +0.3 -0.4
nitrogen source Ammonium chloride (N); RCH2 media; shaking -0.0 +0.0 -1.3 -0.1 +0.3
nitrogen source Ammonium chloride (N); ShewMM media; no shaking -0.4 +0.3 -1.1 -0.1 +0.4
nitrogen source L-Glutamine (N); ShewMM media; shaking +0.2 -0.0 -0.6 -0.8 +0.3
nitrogen source L-Serine (N); ShewMM media; no shaking +0.2 -0.3 -0.7 -0.3 +0.2
mixed community NL-CCM; Mixed culture; Sphingobium sp. HT1-2 2:1 starting OD to Azospirillum -0.1 +0.2 -1.1 +0.1 +0.2
carbon source casaminos (C) +0.3 +0.0 -1.0 +0.1 -0.3
nitrogen source L-Serine (N); ShewMM media; no shaking +0.7 -0.1 -1.3 -0.2 +0.3
nitrogen source L-Glutamine (N); ShewMM media; shaking -0.1 -0.1 +0.4 -0.9 +0.1
nitrogen source L-Glutamine (N); ShewMM media; shaking +0.2 -0.1 +0.4 -0.9 +0.1
nf_with_fulln NF_with_fullN -0.0 +0.1 +0.6 +0.2 -0.8
nitrogen source L-Glutamine (N); RCH2 media; no shaking +0.4 -0.0 +0.4 -0.8 +0.2
nitrogen source L-Serine (N); ShewMM media; shaking +0.1 +0.0 -0.3 -0.3 +0.9
nitrogen source L-Serine (N); ShewMM media; no shaking +0.3 -0.1 +0.8 -0.1 -0.4
nitrogen source L-Serine (N); ShewMM media; shaking +0.2 -0.0 +1.0 -0.4 +0.2
nitrogen source Ammonium chloride (N); RCH2 media; no shaking +0.4 +0.3 -0.4 +0.1 +0.8
carbon source D-Xylose (C) -0.3 -0.1 +1.6 +0.1 +0.1
carbon source NLDM_metabolites (C) +0.8 -0.3 +1.3 +0.0 +0.3
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EX31_RS11615
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EX31_RS11620
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EX31_RS11635
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