Fitness for 5 genes in Rahnella sp. WP5

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500 ntEX31_RS11575 and EX31_RS11580 are separated by 219 nucleotidesEX31_RS11580 and EX31_RS11585 overlap by 1 nucleotidesEX31_RS11585 and EX31_RS11590 are separated by 11 nucleotidesEX31_RS11590 and EX31_RS11595 overlap by 4 nucleotides EX31_RS11575: EX31_RS11575 - hypothetical protein, at 254,854 to 255,135 _RS11575 EX31_RS11580: EX31_RS11580 - ABC transporter substrate-binding protein, at 255,355 to 256,938 _RS11580 EX31_RS11585: EX31_RS11585 - ABC transporter permease, at 256,938 to 257,885 _RS11585 EX31_RS11590: EX31_RS11590 - ABC transporter permease, at 257,897 to 258,724 _RS11590 EX31_RS11595: EX31_RS11595 - ABC transporter ATP-binding protein, at 258,721 to 260,364 _RS11595
Group Condition EX31_RS11575 EX31_RS11580 EX31_RS11585 EX31_RS11590 EX31_RS11595
carbon source NLDM_metabolites (C) N.D. -0.2 -0.7 -0.3 -0.2
nitrogen source Ammonium chloride (N); RCH2 media; shaking N.D. -0.3 -0.6 -0.2 -0.0
nitrogen source L-Serine (N); RCH2 media; no shaking N.D. +0.0 -0.9 -0.0 -0.3
nitrogen source L-Serine (N); ShewMM media; shaking N.D. -0.1 -0.7 +0.1 -0.1
nitrogen source L-Serine (N); RCH2 media; no shaking N.D. +0.1 -0.3 -0.3 -0.2
carbon source D-Mannitol (C) N.D. -0.2 -0.4 +0.1 -0.2
nitrogen source Ammonium chloride (N); RCH2 media; no shaking N.D. +0.1 -0.7 -0.1 +0.1
mixed community NL-CCM; Mixed culture; Sphingobium sp. HT1-2 2:1 starting OD to Azospirillum N.D. -0.1 -0.2 -0.4 +0.1
nitrogen source L-Serine (N); ShewMM media; shaking N.D. -0.3 -0.3 +0.1 +0.0
nitrogen source L-Glutamine (N); RCH2 media; no shaking N.D. +0.1 -0.3 -0.2 -0.1
carbon source D-Xylose (C) N.D. +0.1 -0.3 -0.1 -0.2
carbon source NLDM_metabolites (C) N.D. +0.2 -0.4 +0.1 -0.3
carbon source casaminos (C) N.D. -0.1 -0.2 -0.1 +0.1
mixed community NL-CCM; Mixed culture; Sphingobium sp. HT1-2 2:1 starting OD to Azospirillum N.D. -0.0 +0.2 -0.4 -0.1
mixed community NL-CCM; Mixed culture; Herbiconiux sp. 11RBC 2:1 starting OD to Azospirillum N.D. -0.1 +0.2 -0.1 -0.2
nitrogen source L-Serine (N); RCH2 media; shaking N.D. -0.2 -0.2 +0.3 -0.1
mixed community NL-CCM; Mixed culture; Sphingobium sp. WW5 2:1 starting OD to Azospirillum N.D. -0.1 -0.2 +0.3 -0.2
nitrogen source Ammonium chloride (N); ShewMM media; no shaking N.D. -0.2 +0.0 -0.2 +0.2
carbon source D,L-Lactate (C) N.D. +0.1 +0.2 -0.4 +0.0
mixed community NL-CCM; Mixed culture; Sphingobium sp. HT1-2 2:1 starting OD to Azospirillum N.D. +0.1 +0.2 -0.3 -0.1
mixed community NL-CCM; Mixed culture; Sphingobium sp. HT1-2 2:1 starting OD to Azospirillum N.D. -0.0 +0.3 +0.0 -0.4
nitrogen source L-Glutamine (N); RCH2 media; no shaking N.D. +0.1 -0.4 +0.3 -0.0
mixed community NL-CCM; Mixed culture; Herbiconiux sp. 11RBC 2:1 starting OD to Azospirillum N.D. +0.2 +0.1 -0.3 -0.1
nitrogen source L-Glutamine (N); RCH2 media; shaking N.D. +0.2 -0.3 +0.0 +0.1
nf_with10percent_fulln NF_with10percent_fullN N.D. -0.3 +0.2 -0.1 +0.2
nitrogen source Ammonium chloride (N); RCH2 media; no shaking N.D. +0.1 -0.4 +0.3 +0.2
mgl MGL N.D. -0.2 +0.2 +0.3 -0.0
nitrogen source Ammonium chloride (N); ShewMM media; shaking N.D. +0.2 -0.2 +0.2 +0.2
nf_with_fulln NF_with_fullN N.D. -0.0 +0.3 +0.1 +0.2
nitrogen source L-Glutamine (N); ShewMM media; no shaking N.D. +0.3 +0.1 -0.0 +0.2
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EX31_RS11575
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EX31_RS11580
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EX31_RS11595
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