Fitness for 5 genes in Rahnella sp. WP5

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500 ntEX31_RS11550 and EX31_RS11555 are separated by 152 nucleotidesEX31_RS11555 and EX31_RS11560 are separated by 144 nucleotidesEX31_RS11560 and EX31_RS11565 are separated by 168 nucleotidesEX31_RS11565 and EX31_RS11570 are separated by 25 nucleotides EX31_RS11550: EX31_RS11550 - iron-sulfur cluster carrier protein ApbC, at 248,519 to 249,631 _RS11550 EX31_RS11555: EX31_RS11555 - methionine--tRNA ligase, at 249,784 to 251,814 _RS11555 EX31_RS11560: EX31_RS11560 - DUF1127 domain-containing protein, at 251,959 to 252,231 _RS11560 EX31_RS11565: EX31_RS11565 - PLP-dependent aminotransferase family protein, at 252,400 to 253,818 _RS11565 EX31_RS11570: EX31_RS11570 - LysR family transcriptional regulator, at 253,844 to 254,734 _RS11570
Group Condition EX31_RS11550 EX31_RS11555 EX31_RS11560 EX31_RS11565 EX31_RS11570
nitrogen source L-Glutamine (N); RCH2 media; shaking -0.1 N.D. -1.4 +0.2 -0.1
nitrogen source L-Serine (N); ShewMM media; no shaking -0.3 N.D. -0.1 -0.0 -0.5
carbon source Sucrose (C) -0.1 N.D. -0.3 -0.0 -0.5
nitrogen source L-Glutamine (N); RCH2 media; no shaking +0.0 N.D. -0.4 -0.0 -0.5
carbon source D,L-Lactate (C) -0.1 N.D. -0.6 -0.3 +0.1
nitrogen source L-Glutamine (N); ShewMM media; shaking -0.1 N.D. -0.5 +0.1 -0.2
mgl MGL -0.1 N.D. -0.9 +0.2 +0.2
carbon source casaminos (C) +0.2 N.D. -0.5 -0.3 -0.0
carbon source D-Mannitol (C) +0.2 N.D. -0.9 +0.1 -0.0
carbon source NLDM_metabolites (C) -0.0 N.D. -0.7 +0.1 +0.1
carbon source casaminos (C) -0.2 N.D. -0.8 -0.3 +0.7
nitrogen source L-Glutamine (N); ShewMM media; no shaking +0.3 N.D. -0.7 -0.2 +0.1
nf_with10percent_fulln NF_with10percent_fullN +0.4 N.D. -0.8 +0.2 -0.3
nln NLN +0.3 N.D. -0.6 +0.3 -0.4
nf_with10percent_fulln NF_with10percent_fullN +0.3 N.D. -0.5 +0.3 -0.3
nl-ccm; ambient oxygen NL-CCM; ambient oxygen +0.3 N.D. -0.5 +0.0 -0.0
carbon source D,L-Lactate (C) -0.1 N.D. -0.5 +0.2 +0.3
nf_with10percent_fulln NF_with10percent_fullN +0.3 N.D. -0.6 +0.3 -0.0
nf_with10percent_fulln NF_with10percent_fullN +0.3 N.D. -0.4 +0.1 +0.0
mgl MGL -0.2 N.D. +0.3 +0.2 -0.2
nitrogen source L-Serine (N); ShewMM media; shaking +0.1 N.D. +0.5 -0.1 -0.3
carbon source D-Xylose (C) +0.4 N.D. -0.4 -0.2 +0.7
nitrogen source L-Glutamine (N); ShewMM media; no shaking +0.1 N.D. +0.7 +0.0 -0.4
nitrogen source Ammonium chloride (N); ShewMM media; no shaking -0.3 N.D. +1.1 -0.0 -0.3
nln NLN +0.3 N.D. +0.4 +0.2 -0.1
nitrogen source L-Serine (N); ShewMM media; shaking +0.0 N.D. +0.8 +0.1 +0.1
nitrogen source L-Glutamine (N); ShewMM media; shaking +0.0 N.D. +0.9 +0.2 -0.1
nl-ccm; high oxygen NL-CCM; high oxygen +0.3 N.D. +0.4 +0.2 +0.1
nf_with_fulln NF_with_fullN +0.2 N.D. +0.4 +0.3 +0.3
nl-ccm; high oxygen NL-CCM; high oxygen +0.3 N.D. +0.6 +0.2 -0.1
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EX31_RS11550
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EX31_RS11555
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EX31_RS11570
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