Fitness for 5 genes in Rahnella sp. WP5

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500 ntEX31_RS11265 and EX31_RS11270 are separated by 27 nucleotidesEX31_RS11270 and EX31_RS11275 are separated by 140 nucleotidesEX31_RS11275 and EX31_RS11280 overlap by 1 nucleotidesEX31_RS11280 and EX31_RS11285 are separated by 10 nucleotides EX31_RS11265: EX31_RS11265 - flagellar hook-filament junction protein FlgL, at 185,409 to 186,371 _RS11265 EX31_RS11270: EX31_RS11270 - flagellar hook-associated protein FlgK, at 186,399 to 188,051 _RS11270 EX31_RS11275: EX31_RS11275 - flagellar assembly peptidoglycan hydrolase FlgJ, at 188,192 to 189,142 _RS11275 EX31_RS11280: EX31_RS11280 - flagellar basal body P-ring protein FlgI, at 189,142 to 190,248 _RS11280 EX31_RS11285: EX31_RS11285 - flagellar basal body L-ring protein FlgH, at 190,259 to 190,963 _RS11285
Group Condition EX31_RS11265 EX31_RS11270 EX31_RS11275 EX31_RS11280 EX31_RS11285
nitrogen source L-Glutamine (N); RCH2 media; no shaking -1.5 -1.2 -1.2 -1.1 -1.4
nitrogen source L-Glutamine (N); ShewMM media; no shaking -0.6 -1.7 -1.2 -1.2 -1.2
nitrogen source L-Glutamine (N); RCH2 media; no shaking -0.8 -0.9 -0.7 -1.8 -1.3
nitrogen source L-Glutamine (N); RCH2 media; no shaking -0.9 -1.0 -1.0 -1.1 -1.0
nitrogen source Ammonium chloride (N); RCH2 media; no shaking -0.9 -0.7 -0.7 -0.7 -1.5
nitrogen source L-Glutamine (N); ShewMM media; no shaking -0.7 -0.6 -1.1 -1.0 -0.7
nitrogen source Ammonium chloride (N); RCH2 media; no shaking -0.6 -0.9 -0.6 +0.0 -1.4
nitrogen source Ammonium chloride (N); RCH2 media; no shaking -0.7 -0.6 -0.7 -0.6 -0.7
nitrogen source Ammonium chloride (N); ShewMM media; no shaking -0.3 -0.4 -1.3 -0.1 -0.9
nitrogen source L-Glutamine (N); ShewMM media; no shaking -0.3 -1.2 -0.4 +0.2 -0.7
carbon source NLDM_metabolites (C) -1.1 -0.0 +0.2 -1.1 +0.1
nf_with_fulln NF_with_fullN +0.0 +0.0 -0.4 -1.1 -0.1
carbon source casaminos (C) -0.9 +0.0 -0.3 +0.1 -0.3
mixed community NL-CCM; Mixed culture; Sphingobium sp. WW5 2:1 starting OD to Azospirillum -0.0 -0.0 +0.2 -0.7 -0.4
nl-ccm; ambient oxygen NL-CCM; ambient oxygen -0.0 +0.1 -0.2 -0.8 +0.2
nitrogen source Ammonium chloride (N); ShewMM media; no shaking -0.6 -0.6 +0.2 +0.3 -0.1
carbon source D-Glucose (C) -0.2 -0.1 -0.3 +0.6 -0.5
mgl MGL +0.2 -0.0 -0.2 -0.7 +0.2
nitrogen source L-Serine (N); ShewMM media; shaking +0.3 -0.2 +0.4 -0.4 -0.4
carbon source D-Mannitol (C) -0.2 -0.3 +0.2 +0.5 +0.0
nitrogen source L-Serine (N); ShewMM media; shaking +0.1 -0.3 +0.2 +0.5 -0.2
nitrogen source L-Serine (N); RCH2 media; shaking +0.6 -0.3 +0.2 +0.3 -0.0
carbon source Sucrose (C) +0.1 -0.1 +0.5 +0.6 +0.1
nitrogen source Ammonium chloride (N); ShewMM media; shaking -0.3 +0.1 +0.5 +0.9 +0.1
nitrogen source Ammonium chloride (N); ShewMM media; shaking +0.2 +0.1 +0.1 +0.6 +0.3
nitrogen source L-Serine (N); RCH2 media; no shaking +0.2 +0.0 +0.5 +0.5 +0.3
nitrogen source L-Serine (N); RCH2 media; no shaking +0.7 +0.3 +0.5 +0.4 -0.1
nitrogen source L-Serine (N); RCH2 media; no shaking +0.3 -0.0 +0.7 +0.9 +0.0
nitrogen source L-Serine (N); ShewMM media; no shaking +0.4 +0.1 +0.5 +0.6 +0.8
nitrogen source L-Serine (N); ShewMM media; no shaking +0.7 +0.4 +0.7 +0.7 +0.4
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