Fitness for 5 genes in Rahnella sp. WP5

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500 ntEX31_RS11255 and EX31_RS11260 overlap by 8 nucleotidesEX31_RS11260 and EX31_RS11265 are separated by 304 nucleotidesEX31_RS11265 and EX31_RS11270 are separated by 27 nucleotidesEX31_RS11270 and EX31_RS11275 are separated by 140 nucleotides EX31_RS11255: EX31_RS11255 - CidA/LrgA family protein, at 184,012 to 184,416 _RS11255 EX31_RS11260: EX31_RS11260 - CidB/LrgB family autolysis modulator, at 184,409 to 185,104 _RS11260 EX31_RS11265: EX31_RS11265 - flagellar hook-filament junction protein FlgL, at 185,409 to 186,371 _RS11265 EX31_RS11270: EX31_RS11270 - flagellar hook-associated protein FlgK, at 186,399 to 188,051 _RS11270 EX31_RS11275: EX31_RS11275 - flagellar assembly peptidoglycan hydrolase FlgJ, at 188,192 to 189,142 _RS11275
Group Condition EX31_RS11255 EX31_RS11260 EX31_RS11265 EX31_RS11270 EX31_RS11275
nitrogen source L-Glutamine (N); ShewMM media; no shaking +0.1 -0.5 -0.6 -1.7 -1.2
nitrogen source L-Glutamine (N); RCH2 media; no shaking +0.3 +0.0 -1.5 -1.2 -1.2
nitrogen source L-Glutamine (N); RCH2 media; no shaking -0.1 +0.4 -0.9 -1.0 -1.0
nitrogen source L-Glutamine (N); ShewMM media; no shaking +0.1 -0.3 -0.7 -0.6 -1.1
nitrogen source L-Glutamine (N); RCH2 media; no shaking -0.0 +0.0 -0.8 -0.9 -0.7
nitrogen source Ammonium chloride (N); RCH2 media; no shaking +0.0 +0.1 -0.7 -0.6 -0.7
nitrogen source L-Glutamine (N); ShewMM media; no shaking +0.2 -0.2 -0.3 -1.2 -0.4
nf_with_fulln NF_with_fullN -0.6 -0.7 +0.0 -0.0 -0.5
nitrogen source Ammonium chloride (N); RCH2 media; no shaking +0.3 +0.2 -0.9 -0.7 -0.7
nf_with_fulln NF_with_fullN -0.7 -0.7 -0.1 +0.1 -0.3
nitrogen source Ammonium chloride (N); ShewMM media; no shaking -0.1 +0.3 -0.3 -0.4 -1.3
nitrogen source Ammonium chloride (N); RCH2 media; no shaking +0.3 +0.1 -0.6 -0.9 -0.6
nl-ccm; high oxygen NL-CCM; high oxygen -0.2 -0.6 -0.3 -0.2 -0.4
nf_with_fulln NF_with_fullN -0.5 -0.8 +0.0 +0.0 -0.4
nf_with_fulln NF_with_fullN -0.5 -0.7 -0.1 +0.0 -0.1
nf_with_fulln NF_with_fullN -0.5 -0.5 +0.0 +0.0 -0.4
nitrogen source Ammonium chloride (N); ShewMM media; no shaking -0.1 -0.2 -0.6 -0.6 +0.2
mixed community NL-CCM; Mixed culture; Sphingobium sp. HT1-2 2:1 starting OD to Azospirillum -0.3 -0.4 -0.2 -0.4 +0.2
mixed community NL-CCM; Mixed culture; Sphingobium sp. WW5 2:1 starting OD to Azospirillum -0.3 -0.7 -0.0 -0.0 +0.2
carbon source casaminos (C) +0.3 +0.3 -0.9 +0.0 -0.3
carbon source D-Glucose (C) +0.1 +0.5 -0.2 -0.1 -0.3
nitrogen source L-Serine (N); RCH2 media; shaking +0.0 -0.6 +0.6 -0.3 +0.2
nitrogen source L-Serine (N); ShewMM media; shaking -0.1 -0.2 +0.3 -0.2 +0.4
nitrogen source Ammonium chloride (N); ShewMM media; shaking -0.1 +0.3 -0.3 +0.1 +0.5
nitrogen source L-Serine (N); RCH2 media; no shaking -0.2 -0.2 +0.3 -0.0 +0.7
carbon source NLDM_metabolites (C) +0.5 +1.1 -1.1 -0.0 +0.2
nitrogen source L-Serine (N); ShewMM media; no shaking +0.0 -0.3 +0.4 +0.1 +0.5
nitrogen source L-Serine (N); RCH2 media; no shaking -0.1 +0.1 +0.7 +0.3 +0.5
nitrogen source L-Serine (N); ShewMM media; no shaking -0.0 -0.0 +0.7 +0.4 +0.7
carbon source D,L-Lactate (C) +0.5 +0.6 +0.2 +0.2 +0.5
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