Fitness for 5 genes in Rahnella sp. WP5

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500 ntEX31_RS10895 and EX31_RS10900 overlap by 4 nucleotidesEX31_RS10900 and EX31_RS10905 are separated by 260 nucleotidesEX31_RS10905 and EX31_RS10910 are separated by 27 nucleotidesEX31_RS10910 and EX31_RS10915 overlap by 4 nucleotides EX31_RS10895: EX31_RS10895 - acyl-CoA transferase, at 105,099 to 106,481 _RS10895 EX31_RS10900: EX31_RS10900 - helix-turn-helix domain-containing protein, at 106,478 to 107,329 _RS10900 EX31_RS10905: EX31_RS10905 - DUF2264 domain-containing protein, at 107,590 to 109,428 _RS10905 EX31_RS10910: EX31_RS10910 - oligosaccharide MFS transporter, at 109,456 to 110,745 _RS10910 EX31_RS10915: EX31_RS10915 - glucuronyl hydrolase, at 110,742 to 111,932 _RS10915
Group Condition EX31_RS10895 EX31_RS10900 EX31_RS10905 EX31_RS10910 EX31_RS10915
nitrogen source Ammonium chloride (N); RCH2 media; shaking +0.2 -0.7 -0.2 -0.7 -0.2
nitrogen source L-Serine (N); ShewMM media; no shaking +0.1 -0.7 -0.2 -0.3 +0.2
nitrogen source L-Serine (N); RCH2 media; no shaking +0.2 -0.2 -0.2 -0.4 +0.0
nln NLN -0.0 -0.4 -0.3 +0.1 +0.2
nitrogen source L-Serine (N); ShewMM media; shaking +0.3 -0.4 +0.0 -0.2 -0.2
nitrogen source L-Glutamine (N); RCH2 media; no shaking +0.2 -0.2 +0.1 -0.1 -0.3
nitrogen source L-Glutamine (N); ShewMM media; no shaking -0.2 -0.4 +0.2 -0.1 +0.1
nf_with10percent_fulln NF_with10percent_fullN +0.3 -0.7 +0.0 +0.1 +0.0
nitrogen source Ammonium chloride (N); RCH2 media; no shaking -0.3 -0.2 +0.2 -0.1 +0.2
mgl MGL -0.4 +0.3 +0.0 -0.2 +0.2
nitrogen source L-Serine (N); RCH2 media; shaking +0.4 -0.0 +0.0 -0.3 -0.2
carbon source D-Glucose (C) -0.6 +0.2 +0.4 +0.1 -0.1
mixed community NL-CCM; Mixed culture; Sphingobium sp. WW5 2:1 starting OD to Azospirillum +0.3 -0.5 -0.0 +0.0 +0.2
mixed community NL-CCM; Mixed culture; Sphingobium sp. WW5 2:1 starting OD to Azospirillum +0.0 +0.1 -0.2 -0.2 +0.4
carbon source NLDM_metabolites (C) -0.4 +0.2 +0.2 +0.2 -0.0
carbon source casaminos (C) -0.4 +0.3 -0.0 +0.3 +0.0
nitrogen source Ammonium chloride (N); ShewMM media; no shaking +0.3 -0.2 -0.2 +0.2 +0.2
nln NLN +0.1 -0.3 -0.2 +0.3 +0.3
nitrogen source Ammonium chloride (N); ShewMM media; shaking +0.4 -0.3 +0.1 +0.3 -0.1
carbon source Sucrose (C) -0.3 +0.4 +0.1 +0.2 +0.0
carbon source Sucrose (C) -0.0 +0.6 -0.4 +0.1 +0.2
mixed community NL-CCM; Mixed culture; Sphingobium sp. WW5 2:1 starting OD to Azospirillum +0.1 +0.1 +0.3 -0.3 +0.2
carbon source D-Xylose (C) -0.1 +0.6 -0.2 +0.2 +0.4
carbon source D,L-Lactate (C) -0.4 +0.8 +0.1 +0.4 +0.1
mixed community NL-CCM; Mixed culture; Sphingobium sp. HT1-2 2:1 starting OD to Azospirillum -0.3 +0.6 +0.1 +0.2 +0.4
carbon source D-Mannitol (C) -0.3 +0.9 -0.0 +0.1 +0.2
nl-ccm; vial NL-CCM; vial +0.3 +0.4 -0.1 +0.1 +0.1
carbon source NLDM_metabolites (C) +0.3 +0.2 +0.6 -0.0 -0.0
carbon source casaminos (C) -0.2 +0.7 -0.0 +0.5 +0.1
carbon source D,L-Lactate (C) +0.3 +0.8 -0.1 +0.3 -0.0
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EX31_RS10895
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EX31_RS10900
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EX31_RS10910
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EX31_RS10915
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