Fitness for 5 genes in Rahnella sp. WP5

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500 ntEX31_RS10650 and EX31_RS10655 are separated by 14 nucleotidesEX31_RS10655 and EX31_RS10660 are separated by 98 nucleotidesEX31_RS10660 and EX31_RS10665 are separated by 46 nucleotidesEX31_RS10665 and EX31_RS10670 are separated by 107 nucleotides EX31_RS10650: EX31_RS10650 - lysine N(6)-hydroxylase/L-ornithine N(5)-oxygenase family protein, at 45,352 to 46,662 _RS10650 EX31_RS10655: EX31_RS10655 - GNAT family N-acetyltransferase, at 46,677 to 49,061 _RS10655 EX31_RS10660: EX31_RS10660 - MFS transporter, at 49,160 to 50,380 _RS10660 EX31_RS10665: EX31_RS10665 - lauroyl-Kdo(2)-lipid IV(A) myristoyltransferase, at 50,427 to 51,407 _RS10665 EX31_RS10670: EX31_RS10670 - murein DD-endopeptidase MepM, at 51,515 to 52,849 _RS10670
Group Condition EX31_RS10650 EX31_RS10655 EX31_RS10660 EX31_RS10665 EX31_RS10670
nf_with_fulln NF_with_fullN +0.2 -0.0 +0.1 -1.8 +0.1
mgl MGL -0.2 -0.0 -0.4 -0.9 +0.2
nf_with_fulln NF_with_fullN +0.2 +0.2 +0.1 -1.9 +0.2
nf_with_fulln NF_with_fullN +0.1 +0.0 +0.2 -1.6 +0.2
nf_with_fulln NF_with_fullN +0.3 +0.1 +0.2 -1.7 +0.2
nitrogen source L-Glutamine (N); ShewMM media; no shaking -0.1 +0.1 +0.3 -1.1 +0.4
nitrogen source L-Serine (N); ShewMM media; shaking +0.3 -0.0 -0.3 -0.4 +0.6
nitrogen source L-Glutamine (N); RCH2 media; shaking +0.4 -0.1 +0.0 -0.9 +0.7
nitrogen source L-Glutamine (N); RCH2 media; no shaking +0.4 +0.0 +0.3 -1.0 +0.6
nitrogen source L-Glutamine (N); RCH2 media; no shaking +0.4 +0.1 +0.3 -1.2 +0.6
nitrogen source Ammonium chloride (N); ShewMM media; no shaking +0.4 -0.1 +0.2 -0.7 +0.3
nitrogen source L-Glutamine (N); RCH2 media; shaking +0.2 +0.1 +0.5 -0.9 +0.6
nitrogen source L-Glutamine (N); RCH2 media; no shaking +0.1 +0.1 +0.1 -0.5 +0.7
nitrogen source L-Glutamine (N); ShewMM media; no shaking +0.5 -0.0 +0.4 -0.5 +0.3
carbon source casaminos (C) +0.3 +0.1 +0.4 -0.6 +0.3
nitrogen source L-Glutamine (N); ShewMM media; no shaking +0.8 +0.2 +0.3 -1.1 +0.5
nitrogen source L-Serine (N); RCH2 media; shaking -0.2 -0.1 +0.5 -0.2 +0.7
nitrogen source Ammonium chloride (N); RCH2 media; no shaking +0.1 +0.2 +0.5 -0.5 +0.4
nitrogen source Ammonium chloride (N); RCH2 media; no shaking +0.6 +0.2 +0.1 -0.6 +0.5
nitrogen source L-Glutamine (N); ShewMM media; shaking +0.2 +0.2 +0.2 -0.5 +0.6
nitrogen source Ammonium chloride (N); ShewMM media; shaking +0.4 -0.1 +0.2 -0.3 +0.6
nitrogen source Ammonium chloride (N); RCH2 media; no shaking +0.5 +0.1 +0.2 -0.4 +0.5
nitrogen source Ammonium chloride (N); ShewMM media; no shaking +0.3 +0.1 +0.5 -0.2 +0.4
carbon source NLDM_metabolites (C) -0.4 +0.1 +0.8 +0.3 +0.4
nitrogen source Ammonium chloride (N); ShewMM media; shaking +0.4 -0.1 +0.2 +0.2 +0.7
carbon source D,L-Lactate (C) +0.4 -0.1 +0.4 +0.1 +0.7
carbon source Sucrose (C) +0.1 +0.1 +1.0 +0.1 +0.7
carbon source D-Xylose (C) +0.4 +0.2 +0.5 +0.3 +0.8
carbon source D-Mannitol (C) +0.4 +0.1 +0.4 +0.6 +0.8
carbon source D-Xylose (C) +0.1 +0.2 +0.3 +1.0 +0.9
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