Fitness for 5 genes in Rahnella sp. WP5

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500 ntEX31_RS10455 and EX31_RS10460 are separated by 36 nucleotidesEX31_RS10460 and EX31_RS10465 are separated by 408 nucleotidesEX31_RS10465 and EX31_RS10470 are separated by 467 nucleotidesEX31_RS10470 and EX31_RS10475 are separated by 150 nucleotides EX31_RS10455: EX31_RS10455 - filamentous hemagglutinin N-terminal domain-containing protein, at 323 to 3,697 _RS10455 EX31_RS10460: EX31_RS10460 - ShlB/FhaC/HecB family hemolysin secretion/activation protein, at 3,734 to 5,458 _RS10460 EX31_RS10465: EX31_RS10465 - DUF481 domain-containing protein, at 5,867 to 6,631 _RS10465 EX31_RS10470: EX31_RS10470 - ammonia-dependent NAD(+) synthetase, at 7,099 to 7,929 _RS10470 EX31_RS10475: EX31_RS10475 - multidrug effflux MFS transporter, at 8,080 to 9,276 _RS10475
Group Condition EX31_RS10455 EX31_RS10460 EX31_RS10465 EX31_RS10470 EX31_RS10475
nitrogen source Ammonium chloride (N); ShewMM media; shaking -0.5 -0.2 +0.1 N.D. -0.2
nitrogen source L-Serine (N); ShewMM media; no shaking -0.3 -0.0 -0.2 N.D. -0.3
nitrogen source L-Serine (N); RCH2 media; shaking -0.3 -0.2 -0.1 N.D. -0.1
nitrogen source L-Glutamine (N); RCH2 media; shaking -0.4 -0.1 -0.0 N.D. -0.1
nitrogen source L-Serine (N); ShewMM media; shaking -0.3 -0.3 +0.2 N.D. -0.2
nitrogen source L-Serine (N); ShewMM media; shaking -0.4 -0.1 +0.0 N.D. -0.2
nitrogen source L-Serine (N); ShewMM media; no shaking -0.4 -0.1 +0.1 N.D. -0.2
nitrogen source L-Glutamine (N); ShewMM media; no shaking -0.3 -0.2 +0.2 N.D. -0.2
nitrogen source Ammonium chloride (N); ShewMM media; no shaking -0.1 -0.3 +0.3 N.D. -0.3
nitrogen source L-Serine (N); RCH2 media; no shaking -0.3 -0.0 +0.1 N.D. -0.3
nitrogen source Ammonium chloride (N); RCH2 media; no shaking -0.6 -0.0 +0.2 N.D. -0.1
nitrogen source Ammonium chloride (N); ShewMM media; shaking -0.4 +0.2 +0.1 N.D. -0.3
nitrogen source L-Glutamine (N); ShewMM media; shaking -0.3 -0.1 +0.2 N.D. +0.0
mixed community NL-CCM; Mixed culture; Sphingobium sp. HT1-2 2:1 starting OD to Azospirillum -0.2 +0.1 +0.2 N.D. -0.1
nitrogen source Ammonium chloride (N); RCH2 media; no shaking -0.2 +0.4 +0.1 N.D. -0.2
nf_with10percent_fulln NF_with10percent_fullN -0.2 +0.1 +0.2 N.D. +0.2
nl-ccm; ambient oxygen NL-CCM; ambient oxygen +0.1 -0.2 +0.2 N.D. +0.3
mixed community NL-CCM; Mixed culture; Sphingobium sp. HT1-2 2:1 starting OD to Azospirillum +0.2 +0.2 -0.2 N.D. +0.1
nl-ccm; high oxygen NL-CCM; high oxygen -0.2 +0.0 +0.3 N.D. +0.3
carbon source Sucrose (C) +0.3 +0.2 -0.1 N.D. +0.1
nl-ccm; ambient oxygen NL-CCM; ambient oxygen +0.2 -0.1 +0.2 N.D. +0.3
nl-ccm; low oxygen NL-CCM; low oxygen +0.2 +0.2 +0.1 N.D. +0.1
nf_with_fulln NF_with_fullN +0.2 +0.2 +0.2 N.D. +0.2
nl-ccm; high oxygen NL-CCM; high oxygen +0.3 +0.0 +0.2 N.D. +0.2
nf_with_fulln NF_with_fullN +0.2 +0.3 +0.1 N.D. +0.1
carbon source D-Xylose (C) +0.1 +0.2 +0.0 N.D. +0.3
carbon source NLDM_metabolites (C) +0.3 +0.2 +0.2 N.D. +0.2
nln NLN +0.3 +0.2 +0.1 N.D. +0.3
carbon source NLDM_metabolites (C) +0.3 +0.4 +0.2 N.D. +0.0
carbon source Sucrose (C) +0.3 +0.5 +0.1 N.D. +0.3
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EX31_RS10455
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EX31_RS10460
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EX31_RS10475
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