Fitness for 5 genes in Rahnella sp. WP5

Add gene:

Number of genes on each side:  

Top 30 experiments (either direction), sorted by average fitness

Or view all 123 experiments or choose conditions or try the comparative fitness browser

500 ntEX31_RS10135 and EX31_RS10140 are separated by 235 nucleotidesEX31_RS10140 and EX31_RS10145 are separated by 27 nucleotidesEX31_RS10145 and EX31_RS10150 overlap by 1 nucleotidesEX31_RS10150 and EX31_RS10155 overlap by 4 nucleotides EX31_RS10135: EX31_RS10135 - ROK family transcriptional regulator, at 237,718 to 238,857 _RS10135 EX31_RS10140: EX31_RS10140 - glycosyl transferase, at 239,093 to 240,637 _RS10140 EX31_RS10145: EX31_RS10145 - ABC transporter permease, at 240,665 to 241,585 _RS10145 EX31_RS10150: EX31_RS10150 - ABC transporter permease, at 241,585 to 242,451 _RS10150 EX31_RS10155: EX31_RS10155 - ROK family protein, at 242,448 to 243,377 _RS10155
Group Condition EX31_RS10135 EX31_RS10140 EX31_RS10145 EX31_RS10150 EX31_RS10155
carbon source D,L-Lactate (C) -1.5 -0.4 -0.6 -0.6 -1.2
carbon source D-Xylose (C) -0.3 -0.1 -1.0 -0.9 -0.4
carbon source NLDM_metabolites (C) +0.0 -0.9 -0.7 +0.0 -0.5
nitrogen source L-Serine (N); ShewMM media; shaking -0.3 -0.4 -0.4 -0.5 -0.3
carbon source Sucrose (C) -0.6 -0.3 -0.4 -0.2 -0.4
mixed community NL-CCM; Mixed culture; Sphingobium sp. WW5 2:1 starting OD to Azospirillum -1.1 -0.0 -0.4 -0.2 -0.0
nitrogen source L-Serine (N); RCH2 media; shaking +0.5 -0.5 -1.0 -0.5 +0.0
nitrogen source L-Serine (N); RCH2 media; no shaking +0.2 -0.2 -0.4 -0.6 -0.3
carbon source casaminos (C) -0.8 +0.7 +0.0 -0.7 -0.6
nitrogen source L-Serine (N); RCH2 media; no shaking +0.1 +0.0 +0.0 -0.8 -0.5
nitrogen source Ammonium chloride (N); ShewMM media; shaking +0.5 -0.6 -0.8 +0.2 -0.2
nitrogen source Ammonium chloride (N); ShewMM media; shaking -0.1 +0.2 +0.1 -0.4 -0.7
nl-ccm NL-CCM -0.9 +0.2 -0.4 +0.1 +0.1
nitrogen source L-Glutamine (N); RCH2 media; shaking +0.6 -0.2 -0.3 -0.1 -0.6
nf_with_fulln NF_with_fullN -1.0 -0.3 +0.3 +0.2 +0.1
nitrogen source Ammonium chloride (N); RCH2 media; no shaking +0.5 -0.5 +0.3 -0.4 -0.5
nitrogen source Ammonium chloride (N); RCH2 media; no shaking +0.9 -0.1 -0.6 -0.4 -0.3
nln NLN +0.5 +0.0 -0.7 -0.3 +0.0
nitrogen source L-Glutamine (N); RCH2 media; no shaking +0.5 -0.3 +0.2 -0.4 -0.4
nf_with_fulln NF_with_fullN -1.0 -0.1 +0.3 +0.0 +0.4
nitrogen source Ammonium chloride (N); ShewMM media; no shaking +0.2 +0.3 +0.2 -0.9 -0.2
carbon source NLDM_metabolites (C) +0.0 +0.4 +0.3 -0.4 -0.4
nitrogen source Ammonium chloride (N); RCH2 media; no shaking +1.1 -0.7 +0.4 -0.0 -0.8
nln NLN +0.4 +0.2 +0.3 -0.3 -0.3
nitrogen source Ammonium chloride (N); RCH2 media; shaking +0.5 -0.2 +0.4 -0.3 -0.2
mgl MGL +0.0 +0.1 -0.6 +0.3 +0.5
nitrogen source Ammonium chloride (N); ShewMM media; no shaking +0.7 +0.4 +0.1 -0.4 -0.1
nl-ccm_agar NL-CCM_agar +0.6 -0.4 +0.4 -0.0 +0.2
nitrogen source L-Serine (N); ShewMM media; shaking +0.7 +0.1 +0.4 -0.1 -0.3
nl-ccm; ambient oxygen NL-CCM; ambient oxygen +0.9 +0.0 -0.3 +0.1 +0.2
remove
EX31_RS10135
plot		 remove
EX31_RS10140
plot		 remove
EX31_RS10145		 remove
EX31_RS10150
plot		 remove
EX31_RS10155
plot