Fitness for 5 genes in Rahnella sp. WP5

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500 ntEX31_RS10085 and EX31_RS10090 are separated by 201 nucleotidesEX31_RS10090 and EX31_RS10095 are separated by 9 nucleotidesEX31_RS10095 and EX31_RS10100 are separated by 215 nucleotidesEX31_RS10100 and EX31_RS10105 are separated by 96 nucleotides EX31_RS10085: EX31_RS10085 - DNA-binding transcriptional regulator H-NS, at 227,199 to 227,606 _RS10085 EX31_RS10090: EX31_RS10090 - NAD-dependent epimerase, at 227,808 to 228,815 _RS10090 EX31_RS10095: EX31_RS10095 - UDP-glucose/GDP-mannose dehydrogenase family protein, at 228,825 to 230,168 _RS10095 EX31_RS10100: EX31_RS10100 - two-component system response regulator RssB, at 230,384 to 231,397 _RS10100 EX31_RS10105: EX31_RS10105 - patatin-like phospholipase RssA, at 231,494 to 232,405 _RS10105
Group Condition EX31_RS10085 EX31_RS10090 EX31_RS10095 EX31_RS10100 EX31_RS10105
nf_with_fulln NF_with_fullN N.D. -2.2 N.D. -3.0 -0.0
nf_with_fulln NF_with_fullN N.D. -3.1 N.D. -1.9 +0.1
nf_with_fulln NF_with_fullN N.D. -2.8 N.D. -1.7 +0.0
mgl MGL N.D. -1.4 N.D. -3.2 +0.2
mgl MGL N.D. -3.6 N.D. -0.6 -0.1
nln NLN N.D. -1.2 N.D. -2.5 +0.0
nln NLN N.D. -1.2 N.D. -2.3 +0.0
mgl MGL N.D. -2.1 N.D. -1.2 -0.2
nl-ccm; low oxygen NL-CCM; low oxygen N.D. -2.3 N.D. -0.8 -0.3
nf_with_fulln NF_with_fullN N.D. -2.3 N.D. -1.3 +0.2
nf_with_fulln NF_with_fullN N.D. -2.9 N.D. -0.4 +0.1
nln NLN N.D. -1.0 N.D. -2.5 +0.3
nf_with10percent_fulln NF_with10percent_fullN N.D. -1.9 N.D. -1.0 -0.1
nl-ccm; high oxygen NL-CCM; high oxygen N.D. -1.0 N.D. -1.6 -0.3
nf_with10percent_fulln NF_with10percent_fullN N.D. -1.9 N.D. -0.7 -0.3
nl-ccm; high oxygen NL-CCM; high oxygen N.D. -2.2 N.D. -0.4 -0.3
nl-ccm; ambient oxygen NL-CCM; ambient oxygen N.D. -2.7 N.D. +0.5 -0.4
nln NLN N.D. -0.3 N.D. -2.5 +0.1
nln NLN N.D. -0.4 N.D. -2.2 -0.0
nitrogen source L-Serine (N); ShewMM media; no shaking N.D. -0.9 N.D. -1.5 -0.2
nf_with10percent_fulln NF_with10percent_fullN N.D. -0.5 N.D. -1.9 +0.1
carbon source D,L-Lactate (C) N.D. +2.5 N.D. -2.4 -0.5
mixed community NL-CCM; Mixed culture; Sphingobium sp. HT1-2 2:1 starting OD to Azospirillum N.D. +1.4 N.D. -1.5 -0.2
mixed community NL-CCM; Mixed culture; Sphingobium sp. WW5 2:1 starting OD to Azospirillum N.D. +1.2 N.D. -1.0 -0.4
carbon source Sucrose (C) N.D. +1.5 N.D. -1.3 -0.2
mixed community NL-CCM; Mixed culture; Sphingobium sp. HT1-2 2:1 starting OD to Azospirillum N.D. +1.6 N.D. -0.9 -0.5
carbon source D-Xylose (C) N.D. +1.6 N.D. -0.9 -0.3
carbon source D-Mannitol (C) N.D. +2.7 N.D. -1.8 -0.3
carbon source D,L-Lactate (C) N.D. +2.6 N.D. -1.7 +0.6
carbon source NLDM_metabolites (C) N.D. +1.9 N.D. -1.1 +0.9
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EX31_RS10105
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