Fitness for 5 genes in Rahnella sp. WP5

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500 ntEX31_RS10075 and EX31_RS10080 are separated by 112 nucleotidesEX31_RS10080 and EX31_RS10085 are separated by 623 nucleotidesEX31_RS10085 and EX31_RS10090 are separated by 201 nucleotidesEX31_RS10090 and EX31_RS10095 are separated by 9 nucleotides EX31_RS10075: EX31_RS10075 - bifunctional acetaldehyde-CoA/alcohol dehydrogenase, at 223,185 to 225,854 _RS10075 EX31_RS10080: EX31_RS10080 - thymidine kinase, at 225,967 to 226,575 _RS10080 EX31_RS10085: EX31_RS10085 - DNA-binding transcriptional regulator H-NS, at 227,199 to 227,606 _RS10085 EX31_RS10090: EX31_RS10090 - NAD-dependent epimerase, at 227,808 to 228,815 _RS10090 EX31_RS10095: EX31_RS10095 - UDP-glucose/GDP-mannose dehydrogenase family protein, at 228,825 to 230,168 _RS10095
Group Condition EX31_RS10075 EX31_RS10080 EX31_RS10085 EX31_RS10090 EX31_RS10095
mgl MGL +0.2 +0.1 N.D. -3.6 N.D.
nl-ccm; low oxygen NL-CCM; low oxygen -1.1 -0.0 N.D. -2.3 N.D.
nl-ccm; high oxygen NL-CCM; high oxygen -0.7 +0.0 N.D. -2.2 N.D.
nf_with_fulln NF_with_fullN -0.2 +0.3 N.D. -2.9 N.D.
nf_with_fulln NF_with_fullN -0.0 +0.4 N.D. -3.1 N.D.
nl-ccm; ambient oxygen NL-CCM; ambient oxygen -0.1 +0.1 N.D. -2.7 N.D.
nf_with_fulln NF_with_fullN -0.1 +0.4 N.D. -2.8 N.D.
nl-ccm; low oxygen NL-CCM; low oxygen -0.9 -0.1 N.D. -1.4 N.D.
nf_with_fulln NF_with_fullN -0.1 +0.3 N.D. -2.3 N.D.
nf_with_fulln NF_with_fullN -0.2 +0.3 N.D. -2.2 N.D.
mgl MGL +0.0 +0.0 N.D. -2.1 N.D.
nf_with10percent_fulln NF_with10percent_fullN -0.1 +0.1 N.D. -1.9 N.D.
nl-ccm; high oxygen NL-CCM; high oxygen -0.7 -0.1 N.D. -1.0 N.D.
nl-ccm; low oxygen NL-CCM; low oxygen -0.7 +0.1 N.D. -1.2 N.D.
nl-ccm; low oxygen NL-CCM; low oxygen -0.9 -0.1 N.D. -0.7 N.D.
nf_with10percent_fulln NF_with10percent_fullN -0.0 +0.2 N.D. -1.9 N.D.
nl-ccm; high oxygen NL-CCM; high oxygen -0.8 +0.1 N.D. -0.9 N.D.
nf_with_fulln NF_with_fullN -0.1 +0.3 N.D. -1.4 N.D.
nitrogen source L-Glutamine (N); RCH2 media; no shaking -0.5 +0.4 N.D. -1.0 N.D.
nf_with10percent_fulln NF_with10percent_fullN -0.1 +0.3 N.D. -1.4 N.D.
mgl MGL -0.0 +0.4 N.D. -1.5 N.D.
nitrogen source Ammonium chloride (N); ShewMM media; no shaking -1.2 -0.0 N.D. +1.1 N.D.
mixed community NL-CCM; Mixed culture; Sphingobium sp. HT1-2 2:1 starting OD to Azospirillum +0.2 -0.2 N.D. +1.6 N.D.
mixed community NL-CCM; Mixed culture; Sphingobium sp. WW5 2:1 starting OD to Azospirillum +0.0 -0.2 N.D. +1.8 N.D.
mixed community NL-CCM; Mixed culture; Sphingobium sp. HT1-2 2:1 starting OD to Azospirillum +0.2 +0.1 N.D. +1.6 N.D.
carbon source D,L-Lactate (C) -0.1 -0.3 N.D. +2.5 N.D.
carbon source D-Xylose (C) +0.1 +0.0 N.D. +1.9 N.D.
carbon source NLDM_metabolites (C) -0.0 +0.3 N.D. +1.9 N.D.
carbon source D-Mannitol (C) -0.2 +0.0 N.D. +2.7 N.D.
carbon source D,L-Lactate (C) +0.1 +0.2 N.D. +2.6 N.D.
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EX31_RS10075
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EX31_RS10080
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EX31_RS10095
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