Fitness for 5 genes in Rahnella sp. WP5

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500 ntEX31_RS09995 and EX31_RS10000 are separated by 113 nucleotidesEX31_RS10000 and EX31_RS10005 are separated by 99 nucleotidesEX31_RS10005 and EX31_RS10010 are separated by 73 nucleotidesEX31_RS10010 and EX31_RS10015 are separated by 101 nucleotides EX31_RS09995: EX31_RS09995 - YkgJ family cysteine cluster protein, at 208,086 to 208,463 _RS09995 EX31_RS10000: EX31_RS10000 - UPF0259 family protein, at 208,577 to 209,332 _RS10000 EX31_RS10005: EX31_RS10005 - septation protein A, at 209,432 to 209,971 _RS10005 EX31_RS10010: EX31_RS10010 - acyl-CoA thioester hydrolase YciA, at 210,045 to 210,485 _RS10010 EX31_RS10015: EX31_RS10015 - energy transducer TonB, at 210,587 to 211,318 _RS10015
Group Condition EX31_RS09995 EX31_RS10000 EX31_RS10005 EX31_RS10010 EX31_RS10015
carbon source NLDM_metabolites (C) -4.3 +0.2 N.D. +0.2 N.D.
nf_with_fulln NF_with_fullN -1.4 -0.4 N.D. -0.6 N.D.
nf_with_fulln NF_with_fullN -1.1 -0.2 N.D. -0.7 N.D.
nf_with_fulln NF_with_fullN -0.6 -0.5 N.D. -0.6 N.D.
mgl MGL -1.5 +0.0 N.D. -0.2 N.D.
nl-ccm; ambient oxygen NL-CCM; ambient oxygen -0.3 -1.3 N.D. -0.0 N.D.
nf_with_fulln NF_with_fullN -1.0 -0.1 N.D. -0.5 N.D.
mixed community NL-CCM; Mixed culture; Herbiconiux sp. 11RBC 2:1 starting OD to Azospirillum -0.6 -0.4 N.D. -0.4 N.D.
nf_with10percent_fulln NF_with10percent_fullN -0.9 -0.1 N.D. -0.4 N.D.
nf_with_fulln NF_with_fullN -0.7 -0.2 N.D. -0.4 N.D.
carbon source casaminos (C) -0.6 -0.4 N.D. -0.3 N.D.
nf_with_fulln NF_with_fullN -0.6 -0.3 N.D. -0.4 N.D.
nf_with10percent_fulln NF_with10percent_fullN -0.7 -0.4 N.D. -0.1 N.D.
mgl MGL -0.6 -0.2 N.D. -0.4 N.D.
nln NLN -1.2 +0.0 N.D. -0.1 N.D.
nl-ccm; vial NL-CCM; vial -0.9 -0.0 N.D. -0.3 N.D.
nf_with10percent_fulln NF_with10percent_fullN -0.7 -0.4 N.D. -0.1 N.D.
nitrogen source Ammonium chloride (N); ShewMM media; no shaking -1.4 +0.2 N.D. +0.1 N.D.
nitrogen source Ammonium chloride (N); ShewMM media; shaking -1.7 +0.5 N.D. +0.1 N.D.
carbon source D,L-Lactate (C) -0.8 -0.4 N.D. +0.4 N.D.
nitrogen source Ammonium chloride (N); ShewMM media; no shaking -1.0 +0.2 N.D. +0.0 N.D.
nitrogen source L-Serine (N); RCH2 media; no shaking -1.0 +0.1 N.D. +0.3 N.D.
nitrogen source L-Glutamine (N); RCH2 media; no shaking -1.3 +0.8 N.D. -0.0 N.D.
nitrogen source Ammonium chloride (N); RCH2 media; no shaking -0.5 -0.3 N.D. +0.5 N.D.
mixed community NL-CCM; Mixed culture; Herbiconiux sp. 11RBC 2:1 starting OD to Azospirillum -0.7 +0.4 N.D. +0.2 N.D.
nitrogen source L-Glutamine (N); RCH2 media; no shaking -0.8 +0.3 N.D. +0.4 N.D.
nitrogen source Ammonium chloride (N); RCH2 media; no shaking +0.2 +0.7 N.D. -0.7 N.D.
nitrogen source L-Glutamine (N); RCH2 media; shaking -0.5 +0.5 N.D. +0.2 N.D.
carbon source Sucrose (C) +0.6 -0.5 N.D. +0.5 N.D.
nitrogen source L-Serine (N); ShewMM media; shaking -0.5 +0.6 N.D. +0.5 N.D.
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