Fitness for 5 genes in Rahnella sp. WP5

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500 ntEX31_RS09900 and EX31_RS09905 are separated by 114 nucleotidesEX31_RS09905 and EX31_RS09910 are separated by 360 nucleotidesEX31_RS09910 and EX31_RS09915 are separated by 18 nucleotidesEX31_RS09915 and EX31_RS09920 are separated by 16 nucleotides EX31_RS09900: EX31_RS09900 - YciN family protein, at 190,077 to 190,328 _RS09900 EX31_RS09905: EX31_RS09905 - protease SohB, at 190,443 to 191,486 _RS09905 EX31_RS09910: EX31_RS09910 - YciK family oxidoreductase, at 191,847 to 192,608 _RS09910 EX31_RS09915: EX31_RS09915 - cob(I)yrinic acid a,c-diamide adenosyltransferase, at 192,627 to 193,217 _RS09915 EX31_RS09920: EX31_RS09920 - nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase, at 193,234 to 194,277 _RS09920
Group Condition EX31_RS09900 EX31_RS09905 EX31_RS09910 EX31_RS09915 EX31_RS09920
carbon source D-Xylose (C) +0.3 -0.3 -0.0 -0.8 -0.6
mgl MGL -0.1 -0.5 -0.1 -0.1 -0.6
carbon source Sucrose (C) -0.3 -0.2 -0.1 -0.5 -0.3
carbon source D-Mannitol (C) -0.5 +0.2 +0.1 -1.3 +0.1
nitrogen source Ammonium chloride (N); RCH2 media; no shaking -0.4 +0.4 -0.2 -0.7 -0.4
mgl MGL -0.1 -0.9 -0.2 +0.1 -0.1
nitrogen source Ammonium chloride (N); RCH2 media; shaking -0.3 +0.5 -0.1 -0.9 -0.3
mixed community NL-CCM; Mixed culture; Sphingobium sp. HT1-2 2:1 starting OD to Azospirillum +0.2 -0.6 -0.3 -0.2 -0.2
nitrogen source L-Glutamine (N); RCH2 media; shaking -0.5 +0.2 +0.0 -1.0 +0.3
nitrogen source L-Glutamine (N); RCH2 media; shaking -0.1 +0.3 +0.1 -1.0 -0.2
nitrogen source L-Glutamine (N); RCH2 media; no shaking -0.7 +0.0 -0.1 -0.6 +0.6
nf_with_fulln NF_with_fullN -0.2 -0.4 +0.2 +0.2 -0.5
nitrogen source Ammonium chloride (N); ShewMM media; no shaking -0.8 +0.4 -0.1 -0.3 +0.2
nitrogen source L-Glutamine (N); ShewMM media; shaking +0.1 +0.3 -0.1 -1.1 +0.2
nitrogen source L-Glutamine (N); ShewMM media; shaking -0.3 +0.2 -0.1 -1.0 +0.5
nitrogen source L-Serine (N); RCH2 media; shaking -0.6 +0.1 -0.2 -0.3 +0.5
nitrogen source L-Glutamine (N); RCH2 media; no shaking -0.6 +0.4 +0.2 -0.8 +0.4
nitrogen source Ammonium chloride (N); RCH2 media; no shaking -0.4 +0.1 -0.2 -0.3 +0.5
nitrogen source L-Glutamine (N); ShewMM media; shaking +0.1 +0.3 -0.1 -1.1 +0.4
nitrogen source Ammonium chloride (N); ShewMM media; shaking -0.3 -0.0 +0.0 -0.5 +0.6
nitrogen source L-Glutamine (N); RCH2 media; no shaking -0.4 +0.1 +0.1 -0.6 +0.6
nitrogen source L-Serine (N); RCH2 media; no shaking -0.2 -0.2 +0.1 -0.5 +0.5
nitrogen source Ammonium chloride (N); ShewMM media; shaking +0.1 +0.2 -0.0 -0.9 +0.4
nitrogen source Ammonium chloride (N); ShewMM media; no shaking -0.4 -0.1 -0.2 -0.3 +0.9
nitrogen source L-Glutamine (N); ShewMM media; no shaking +0.0 +0.2 +0.1 -0.8 +0.4
nf_with10percent_fulln NF_with10percent_fullN +0.2 -0.2 +0.2 +0.3 -0.5
nitrogen source L-Glutamine (N); ShewMM media; no shaking +0.1 +0.5 -0.1 -0.7 +0.4
nl-ccm_agar NL-CCM_agar +0.6 +0.3 -0.2 +0.0 -0.4
nitrogen source L-Serine (N); ShewMM media; no shaking -0.3 +0.7 -0.1 -0.2 +0.3
nitrogen source Ammonium chloride (N); RCH2 media; shaking +0.1 +0.3 -0.1 -0.3 +0.6
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EX31_RS09900
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EX31_RS09905
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EX31_RS09920
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