Fitness for 5 genes in Rahnella sp. WP5

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500 ntEX31_RS09695 and EX31_RS09700 are separated by 308 nucleotidesEX31_RS09700 and EX31_RS09705 are separated by 92 nucleotidesEX31_RS09705 and EX31_RS09710 are separated by 3 nucleotidesEX31_RS09710 and EX31_RS09715 are separated by 156 nucleotides EX31_RS09695: EX31_RS09695 - D-alanyl-D-alanine carboxypeptidase, at 139,570 to 140,781 _RS09695 EX31_RS09700: EX31_RS09700 - GlpM family protein, at 141,090 to 141,431 _RS09700 EX31_RS09705: EX31_RS09705 - HAD-IB family hydrolase, at 141,524 to 142,237 _RS09705 EX31_RS09710: EX31_RS09710 - LysR family transcriptional regulator, at 142,241 to 143,164 _RS09710 EX31_RS09715: EX31_RS09715 - M20 family metallopeptidase, at 143,321 to 144,742 _RS09715
Group Condition EX31_RS09695 EX31_RS09700 EX31_RS09705 EX31_RS09710 EX31_RS09715
nitrogen source Ammonium chloride (N); ShewMM media; shaking -0.4 -1.1 -0.6 -0.7 -0.1
carbon source D,L-Lactate (C) -0.1 -1.9 +0.3 +0.2 -0.8
nitrogen source Ammonium chloride (N); ShewMM media; no shaking -0.2 -1.1 -0.5 -0.0 +0.0
carbon source D,L-Lactate (C) +0.2 -2.3 -0.2 +0.4 +0.0
nitrogen source Ammonium chloride (N); RCH2 media; no shaking -0.2 -1.1 -0.2 -0.0 -0.2
nitrogen source Ammonium chloride (N); ShewMM media; no shaking -0.1 -0.8 -0.1 -0.3 -0.2
nitrogen source Ammonium chloride (N); RCH2 media; shaking +0.0 -0.3 -0.8 -0.3 -0.1
carbon source NLDM_metabolites (C) -0.0 -1.7 +0.4 +0.3 -0.4
nitrogen source L-Serine (N); ShewMM media; no shaking +0.0 -0.7 +0.1 -0.5 -0.3
carbon source D-Mannitol (C) -0.0 -1.3 +0.1 +0.2 -0.0
carbon source Sucrose (C) +0.1 -1.1 +0.4 -0.4 -0.1
nitrogen source L-Glutamine (N); ShewMM media; no shaking -0.3 -0.1 -0.6 -0.4 +0.2
nitrogen source L-Serine (N); RCH2 media; no shaking -0.3 -1.0 -0.1 +0.2 +0.1
nitrogen source Ammonium chloride (N); ShewMM media; no shaking -0.0 -1.2 -0.2 +0.3 +0.1
nitrogen source L-Serine (N); ShewMM media; no shaking -0.1 -0.9 +0.2 +0.2 -0.2
nf_with_fulln NF_with_fullN +0.4 -0.5 -0.2 +0.0 -0.4
nl-ccm; high oxygen NL-CCM; high oxygen +0.2 -0.1 -0.2 -0.7 +0.2
nf_with_fulln NF_with_fullN +0.4 -0.4 -0.0 +0.1 -0.6
nitrogen source Ammonium chloride (N); RCH2 media; no shaking -0.0 -0.9 +0.2 +0.1 +0.5
carbon source D-Xylose (C) +0.4 -0.8 +0.0 +0.5 -0.2
mixed community NL-CCM; Mixed culture; Herbiconiux sp. 11RBC 2:1 starting OD to Azospirillum +0.3 +0.4 -0.4 +0.3 -0.4
carbon source Sucrose (C) -0.1 -0.4 -0.5 +0.9 +0.4
carbon source D-Glucose (C) +0.5 -0.4 -0.5 +0.3 +0.4
carbon source D-Xylose (C) +0.5 -1.4 +0.2 +0.6 +0.5
carbon source casaminos (C) +0.4 -0.0 -0.4 +0.8 -0.4
mixed community NL-CCM; Mixed culture; Sphingobium sp. WW5 2:1 starting OD to Azospirillum -0.1 +0.8 -0.3 +0.1 +0.2
nl-ccm_agar NL-CCM_agar -0.1 +1.0 +0.2 +0.0 -0.3
nl-ccm_agar NL-CCM_agar +0.1 +1.1 +0.2 +0.1 -0.5
nl-ccm_agar NL-CCM_agar +0.2 +1.4 -0.2 -0.1 +0.2
nitrogen source L-Glutamine (N); RCH2 media; no shaking +0.3 +0.2 +0.5 +0.2 +0.4
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EX31_RS09695
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EX31_RS09700
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EX31_RS09710
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EX31_RS09715
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