Fitness for 5 genes in Rahnella sp. WP5

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500 ntEX31_RS09590 and EX31_RS09595 are separated by 167 nucleotidesEX31_RS09595 and EX31_RS09600 are separated by 3 nucleotidesEX31_RS09600 and EX31_RS09605 are separated by 5 nucleotidesEX31_RS09605 and EX31_RS09610 are separated by 84 nucleotides EX31_RS09590: EX31_RS09590 - flagellar type III secretion system pore protein FliP, at 121,356 to 122,138 _RS09590 EX31_RS09595: EX31_RS09595 - flagellar biosynthesis protein FliQ, at 122,306 to 122,575 _RS09595 EX31_RS09600: EX31_RS09600 - flagellar type III secretion system protein FliR, at 122,579 to 123,364 _RS09600 EX31_RS09605: EX31_RS09605 - 23S rRNA (uracil(747)-C(5))-methyltransferase RlmC, at 123,370 to 124,500 _RS09605 EX31_RS09610: EX31_RS09610 - YbjO family protein, at 124,585 to 125,031 _RS09610
Group Condition EX31_RS09590 EX31_RS09595 EX31_RS09600 EX31_RS09605 EX31_RS09610
nitrogen source L-Glutamine (N); RCH2 media; no shaking -1.0 N.D. -2.6 -0.2 +0.2
nitrogen source L-Glutamine (N); RCH2 media; no shaking -1.2 N.D. -1.7 +0.3 -0.1
nitrogen source Ammonium chloride (N); RCH2 media; no shaking -1.3 N.D. -0.1 -1.1 +0.1
nitrogen source L-Glutamine (N); RCH2 media; no shaking -0.8 N.D. -1.5 +0.0 -0.1
nitrogen source Ammonium chloride (N); RCH2 media; no shaking -0.2 N.D. -2.0 +0.4 -0.2
nitrogen source Ammonium chloride (N); RCH2 media; no shaking -0.8 N.D. -0.2 -0.3 -0.2
nf_with10percent_fulln NF_with10percent_fullN -0.6 N.D. -0.4 -0.1 -0.4
nf_with_fulln NF_with_fullN -0.4 N.D. -0.4 -0.0 -0.6
nf_with10percent_fulln NF_with10percent_fullN -0.5 N.D. -0.7 -0.0 -0.3
nitrogen source L-Glutamine (N); ShewMM media; no shaking -0.8 N.D. -0.6 -0.0 +0.1
nitrogen source L-Glutamine (N); ShewMM media; no shaking -0.9 N.D. -0.4 -0.0 +0.2
nf_with_fulln NF_with_fullN -0.7 N.D. +0.2 -0.2 -0.4
nl-ccm_agar NL-CCM_agar -0.6 N.D. +0.5 -0.4 -0.4
carbon source casaminos (C) +0.4 N.D. -0.9 -0.1 -0.3
carbon source D,L-Lactate (C) -1.4 N.D. +1.4 -0.2 -0.2
carbon source casaminos (C) +0.3 N.D. +0.6 -0.7 -0.5
nl-ccm; ambient oxygen NL-CCM; ambient oxygen +0.3 N.D. -0.7 +0.3 -0.1
carbon source D,L-Lactate (C) -0.4 N.D. +1.2 -0.2 -0.5
carbon source D-Mannitol (C) +0.1 N.D. +0.8 -0.3 -0.2
carbon source Sucrose (C) +0.4 N.D. +1.0 -0.1 -0.1
nitrogen source L-Serine (N); RCH2 media; no shaking +0.9 N.D. +0.4 +0.1 -0.1
nitrogen source L-Serine (N); ShewMM media; no shaking +0.7 N.D. +0.2 +0.5 -0.1
nitrogen source L-Serine (N); RCH2 media; no shaking +0.5 N.D. +0.9 +0.2 -0.1
mixed community NL-CCM; Mixed culture; Herbiconiux sp. 11RBC 2:1 starting OD to Azospirillum +0.5 N.D. +0.4 +0.3 +0.2
nitrogen source L-Serine (N); ShewMM media; no shaking +0.6 N.D. +0.8 +0.4 -0.1
carbon source NLDM_metabolites (C) +0.6 N.D. +0.9 +0.4 -0.2
nitrogen source Ammonium chloride (N); ShewMM media; no shaking +0.8 N.D. +0.6 +0.1 +0.3
nitrogen source L-Serine (N); ShewMM media; shaking +0.6 N.D. +0.3 +0.7 +0.3
nitrogen source L-Serine (N); ShewMM media; no shaking +1.0 N.D. +1.0 +0.7 -0.5
carbon source NLDM_metabolites (C) +1.3 N.D. +0.5 +0.5 +0.2
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