Fitness for 5 genes in Rahnella sp. WP5

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500 ntEX31_RS09540 and EX31_RS09545 overlap by 4 nucleotidesEX31_RS09545 and EX31_RS09550 overlap by 8 nucleotidesEX31_RS09550 and EX31_RS09555 overlap by 1 nucleotidesEX31_RS09555 and EX31_RS09560 are separated by 21 nucleotides EX31_RS09540: EX31_RS09540 - flagellar basal body M-ring protein FliF, at 112,081 to 113,790 _RS09540 EX31_RS09545: EX31_RS09545 - flagellar motor switch protein FliG, at 113,787 to 114,779 _RS09545 EX31_RS09550: EX31_RS09550 - flagellar assembly protein FliH, at 114,772 to 115,557 _RS09550 EX31_RS09555: EX31_RS09555 - flagellum-specific ATP synthase FliI, at 115,557 to 116,921 _RS09555 EX31_RS09560: EX31_RS09560 - flagella biosynthesis chaperone FliJ, at 116,943 to 117,389 _RS09560
Group Condition EX31_RS09540 EX31_RS09545 EX31_RS09550 EX31_RS09555 EX31_RS09560
nitrogen source L-Glutamine (N); RCH2 media; no shaking -1.4 -1.3 -2.9 -1.4 -2.3
nitrogen source L-Glutamine (N); RCH2 media; no shaking -1.4 -1.4 -1.7 -0.8 -2.1
nitrogen source Ammonium chloride (N); RCH2 media; no shaking -0.9 -1.2 -2.0 -1.5 -1.5
nitrogen source L-Glutamine (N); RCH2 media; no shaking -1.4 -1.1 -1.8 -1.3 -1.1
nitrogen source Ammonium chloride (N); RCH2 media; no shaking -0.9 -1.6 -0.6 -1.4 -1.4
nitrogen source L-Glutamine (N); ShewMM media; no shaking -0.6 -1.0 -1.8 -0.7 -1.9
nitrogen source L-Glutamine (N); ShewMM media; no shaking -1.1 -1.5 -1.1 -0.4 -1.3
nitrogen source L-Glutamine (N); ShewMM media; no shaking -1.0 -1.6 -0.3 -1.2 -1.2
nitrogen source Ammonium chloride (N); RCH2 media; no shaking -0.5 -1.5 -0.7 -0.7 -0.6
nitrogen source Ammonium chloride (N); ShewMM media; no shaking -0.2 -0.8 -1.7 -0.9 +0.1
nl-ccm; vial NL-CCM; vial -0.1 -0.8 -1.4 -0.0 -0.3
nitrogen source Ammonium chloride (N); ShewMM media; shaking -0.4 -1.0 -1.0 -0.2 +0.1
nitrogen source Ammonium chloride (N); ShewMM media; no shaking -0.2 -0.1 -2.2 +0.2 -0.1
nitrogen source Ammonium chloride (N); ShewMM media; no shaking -0.0 -0.5 -1.0 -0.3 -0.7
carbon source D,L-Lactate (C) -0.2 +0.0 -1.7 -0.3 -0.1
nf_with_fulln NF_with_fullN +0.0 -0.7 -1.0 -0.1 -0.3
mixed community NL-CCM; Mixed culture; Sphingobium sp. HT1-2 2:1 starting OD to Azospirillum +0.1 -0.3 -1.5 +0.1 -0.5
carbon source D,L-Lactate (C) -0.2 +0.5 -1.8 +0.2 -0.5
nitrogen source Ammonium chloride (N); ShewMM media; shaking +0.1 -1.0 -0.9 -0.0 +0.2
carbon source Sucrose (C) +0.3 -0.6 -0.2 +0.2 -0.9
nitrogen source Ammonium chloride (N); RCH2 media; shaking +0.1 -0.2 -1.1 +0.2 +0.4
nl-ccm; high oxygen NL-CCM; high oxygen +0.0 -0.6 +0.7 +0.1 -0.6
nitrogen source Ammonium chloride (N); ShewMM media; shaking +0.3 -0.3 -1.0 +0.1 +0.6
nitrogen source L-Serine (N); RCH2 media; no shaking +0.3 -0.7 -0.5 +0.5 +0.8
nitrogen source L-Serine (N); RCH2 media; no shaking +0.0 +0.2 -0.3 +0.7 +0.7
carbon source Sucrose (C) +0.3 +0.2 +1.1 +0.1 +0.2
nitrogen source L-Serine (N); ShewMM media; no shaking +0.5 +0.1 +0.3 +0.4 +0.7
carbon source D-Mannitol (C) +0.5 +0.9 +0.0 +0.0 +0.8
carbon source NLDM_metabolites (C) +0.4 +0.5 +0.6 +0.3 +0.6
carbon source NLDM_metabolites (C) +0.3 +0.6 +2.1 +0.4 +1.0
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EX31_RS09540
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EX31_RS09545
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EX31_RS09560
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