Fitness for 5 genes in Rahnella sp. WP5

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500 ntEX31_RS09290 and EX31_RS09295 are separated by 266 nucleotidesEX31_RS09295 and EX31_RS09300 are separated by 168 nucleotidesEX31_RS09300 and EX31_RS09305 are separated by 96 nucleotidesEX31_RS09305 and EX31_RS09310 overlap by 4 nucleotides EX31_RS09290: EX31_RS09290 - hypothetical protein, at 58,944 to 59,468 _RS09290 EX31_RS09295: EX31_RS09295 - D-amino-acid transaminase, at 59,735 to 60,598 _RS09295 EX31_RS09300: EX31_RS09300 - hypothetical protein, at 60,767 to 61,006 _RS09300 EX31_RS09305: EX31_RS09305 - respiratory nitrate reductase subunit gamma, at 61,103 to 61,783 _RS09305 EX31_RS09310: EX31_RS09310 - nitrate reductase molybdenum cofactor assembly chaperone, at 61,780 to 62,502 _RS09310
Group Condition EX31_RS09290 EX31_RS09295 EX31_RS09300 EX31_RS09305 EX31_RS09310
nitrogen source L-Glutamine (N); ShewMM media; no shaking -2.8 -0.2 N.D. -0.0 -0.4
nitrogen source Ammonium chloride (N); ShewMM media; shaking -2.0 -0.1 N.D. -0.6 -0.4
nitrogen source L-Serine (N); RCH2 media; shaking -2.3 +0.1 N.D. +0.1 -0.6
carbon source casaminos (C) -1.6 +0.1 N.D. -0.2 -0.9
nitrogen source L-Serine (N); RCH2 media; shaking -1.4 -0.3 N.D. +0.1 -0.5
nitrogen source L-Serine (N); ShewMM media; shaking -0.7 -0.3 N.D. -0.3 -0.5
carbon source D-Xylose (C) -1.6 -0.4 N.D. +0.2 -0.0
carbon source Sucrose (C) -1.2 -0.6 N.D. -0.0 +0.2
nf_with10percent_fulln NF_with10percent_fullN -0.9 -0.5 N.D. +0.1 -0.2
nl-ccm; low oxygen NL-CCM; low oxygen -0.2 -0.3 N.D. -0.1 -0.8
nln NLN -0.3 -0.7 N.D. -0.1 -0.4
carbon source D,L-Lactate (C) -1.1 -0.7 N.D. +0.6 -0.3
nitrogen source L-Glutamine (N); RCH2 media; no shaking -1.1 -0.1 N.D. -0.3 +0.1
nitrogen source Ammonium chloride (N); ShewMM media; no shaking -0.6 -0.3 N.D. +0.7 -0.6
nitrogen source Ammonium chloride (N); RCH2 media; shaking -0.3 -0.2 N.D. +0.4 -0.7
nitrogen source Ammonium chloride (N); RCH2 media; no shaking -1.3 -0.2 N.D. +0.7 -0.1
mgl MGL -0.9 -0.2 N.D. +0.0 +0.4
nf_with_fulln NF_with_fullN -0.8 -0.5 N.D. +0.2 +0.4
nl-ccm; ambient oxygen NL-CCM; ambient oxygen +0.4 +0.1 N.D. -0.5 -0.6
nitrogen source Ammonium chloride (N); ShewMM media; no shaking +0.5 -0.3 N.D. -0.4 -0.4
nitrogen source Ammonium chloride (N); ShewMM media; shaking +0.5 -0.2 N.D. +0.3 -0.8
mixed community NL-CCM; Mixed culture; Sphingobium sp. HT1-2 2:1 starting OD to Azospirillum -0.6 -0.3 N.D. +0.1 +0.7
mixed community NL-CCM; Mixed culture; Sphingobium sp. HT1-2 2:1 starting OD to Azospirillum -0.9 +0.3 N.D. +0.2 +0.5
nln NLN -0.4 -0.4 N.D. +0.3 +0.5
nitrogen source L-Glutamine (N); RCH2 media; shaking -0.1 -0.7 N.D. +0.8 +0.2
nitrogen source Ammonium chloride (N); RCH2 media; no shaking +1.0 -0.1 N.D. -0.2 -0.3
nitrogen source L-Serine (N); ShewMM media; shaking +0.4 -0.4 N.D. -0.1 +0.6
nitrogen source Ammonium chloride (N); RCH2 media; shaking +0.3 +0.3 N.D. +0.5 -0.6
mixed community NL-CCM; Mixed culture; Sphingobium sp. HT1-2 2:1 starting OD to Azospirillum -0.6 +0.2 N.D. +0.4 +0.5
carbon source NLDM_metabolites (C) +0.6 +0.1 N.D. +0.8 -0.5
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