Fitness for 5 genes in Rahnella sp. WP5

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500 ntEX31_RS09285 and EX31_RS09290 are separated by 14 nucleotidesEX31_RS09290 and EX31_RS09295 are separated by 266 nucleotidesEX31_RS09295 and EX31_RS09300 are separated by 168 nucleotidesEX31_RS09300 and EX31_RS09305 are separated by 96 nucleotides EX31_RS09285: EX31_RS09285 - hypothetical protein, at 58,624 to 58,929 _RS09285 EX31_RS09290: EX31_RS09290 - hypothetical protein, at 58,944 to 59,468 _RS09290 EX31_RS09295: EX31_RS09295 - D-amino-acid transaminase, at 59,735 to 60,598 _RS09295 EX31_RS09300: EX31_RS09300 - hypothetical protein, at 60,767 to 61,006 _RS09300 EX31_RS09305: EX31_RS09305 - respiratory nitrate reductase subunit gamma, at 61,103 to 61,783 _RS09305
Group Condition EX31_RS09285 EX31_RS09290 EX31_RS09295 EX31_RS09300 EX31_RS09305
nitrogen source L-Glutamine (N); ShewMM media; no shaking +0.8 -2.8 -0.2 N.D. -0.0
nitrogen source L-Serine (N); RCH2 media; shaking -0.1 -2.3 +0.1 N.D. +0.1
nitrogen source Ammonium chloride (N); ShewMM media; shaking +0.9 -2.0 -0.1 N.D. -0.6
nitrogen source L-Glutamine (N); RCH2 media; no shaking -0.3 -1.1 -0.1 N.D. -0.3
mixed community NL-CCM; Mixed culture; Herbiconiux sp. 11RBC 2:1 starting OD to Azospirillum -0.7 -0.2 -0.4 N.D. -0.4
carbon source D,L-Lactate (C) -0.4 -1.1 -0.7 N.D. +0.6
nitrogen source L-Serine (N); ShewMM media; no shaking -0.8 -0.3 -0.4 N.D. +0.1
nitrogen source L-Serine (N); RCH2 media; shaking +0.2 -1.4 -0.3 N.D. +0.1
nitrogen source Ammonium chloride (N); RCH2 media; no shaking -0.4 -1.3 -0.2 N.D. +0.7
carbon source D-Xylose (C) +0.6 -1.6 -0.4 N.D. +0.2
carbon source casaminos (C) +0.6 -1.6 +0.1 N.D. -0.2
carbon source Sucrose (C) +0.7 -1.2 -0.6 N.D. -0.0
nl-ccm; ambient oxygen NL-CCM; ambient oxygen -0.7 +0.4 +0.1 N.D. -0.5
nf_with10percent_fulln NF_with10percent_fullN +0.7 -0.9 -0.5 N.D. +0.1
nf_with10percent_fulln NF_with10percent_fullN +0.5 -0.8 -0.2 N.D. +0.1
nitrogen source L-Glutamine (N); RCH2 media; shaking -0.3 -0.1 -0.7 N.D. +0.8
nitrogen source Ammonium chloride (N); ShewMM media; no shaking -0.1 -0.6 -0.3 N.D. +0.7
nf_with_fulln NF_with_fullN +0.8 -0.8 -0.5 N.D. +0.2
mixed community NL-CCM; Mixed culture; Sphingobium sp. HT1-2 2:1 starting OD to Azospirillum +0.2 -0.9 +0.3 N.D. +0.2
mgl MGL +0.6 +0.1 -0.3 N.D. -0.5
mixed community NL-CCM; Mixed culture; Sphingobium sp. HT1-2 2:1 starting OD to Azospirillum -0.2 -0.6 +0.2 N.D. +0.4
nitrogen source Ammonium chloride (N); ShewMM media; no shaking +0.3 +0.5 -0.3 N.D. -0.4
nln NLN +0.7 -0.4 -0.4 N.D. +0.3
nitrogen source L-Glutamine (N); RCH2 media; no shaking +0.6 +0.3 -0.5 N.D. -0.1
nitrogen source Ammonium chloride (N); RCH2 media; shaking +0.7 -0.3 -0.2 N.D. +0.4
nitrogen source Ammonium chloride (N); RCH2 media; no shaking +0.4 +0.7 -0.1 N.D. -0.3
nf_with_fulln NF_with_fullN +0.8 +0.3 -0.3 N.D. +0.2
mgl MGL +0.6 +0.4 -0.2 N.D. +0.4
carbon source NLDM_metabolites (C) +1.6 -0.3 -0.3 N.D. +0.7
carbon source NLDM_metabolites (C) +0.7 +0.6 +0.1 N.D. +0.8
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EX31_RS09285
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EX31_RS09290
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EX31_RS09300
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EX31_RS09305
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