Fitness for 5 genes in Rahnella sp. WP5

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500 ntEX31_RS08875 and EX31_RS08880 are separated by 47 nucleotidesEX31_RS08880 and EX31_RS08885 are separated by 65 nucleotidesEX31_RS08885 and EX31_RS08890 are separated by 94 nucleotidesEX31_RS08890 and EX31_RS08895 are separated by 264 nucleotides EX31_RS08875: EX31_RS08875 - phosphatidylserine decarboxylase, at 285,984 to 286,961 _RS08875 EX31_RS08880: EX31_RS08880 - miniconductance mechanosensitive channel MscM, at 287,009 to 290,377 _RS08880 EX31_RS08885: EX31_RS08885 - 8-oxoguanine deaminase, at 290,443 to 291,801 _RS08885 EX31_RS08890: EX31_RS08890 - purine permease, at 291,896 to 293,260 _RS08890 EX31_RS08895: EX31_RS08895 - elongation factor P--(R)-beta-lysine ligase, at 293,525 to 294,502 _RS08895
Group Condition EX31_RS08875 EX31_RS08880 EX31_RS08885 EX31_RS08890 EX31_RS08895
carbon source D,L-Lactate (C) N.D. -0.1 -0.2 -0.2 N.D.
carbon source casaminos (C) N.D. -0.1 -0.2 -0.1 N.D.
carbon source NLDM_metabolites (C) N.D. -0.1 +0.0 -0.2 N.D.
carbon source D-Xylose (C) N.D. -0.1 -0.1 -0.1 N.D.
carbon source D,L-Lactate (C) N.D. -0.0 -0.1 -0.1 N.D.
carbon source D-Mannitol (C) N.D. -0.2 -0.1 +0.0 N.D.
mixed community NL-CCM; Mixed culture; Herbiconiux sp. 11RBC 2:1 starting OD to Azospirillum N.D. -0.1 +0.0 -0.2 N.D.
nitrogen source Ammonium chloride (N); RCH2 media; shaking N.D. -0.1 -0.2 +0.1 N.D.
nl-ccm; vial NL-CCM; vial N.D. +0.0 +0.1 -0.2 N.D.
mixed community NL-CCM; Mixed culture; Sphingobium sp. HT1-2 2:1 starting OD to Azospirillum N.D. +0.1 -0.1 -0.0 N.D.
nitrogen source L-Serine (N); RCH2 media; shaking N.D. +0.1 +0.0 -0.1 N.D.
nl-ccm NL-CCM N.D. +0.0 +0.1 -0.1 N.D.
nl-ccm; high oxygen NL-CCM; high oxygen N.D. +0.1 +0.0 -0.1 N.D.
nl-ccm; ambient oxygen NL-CCM; ambient oxygen N.D. +0.1 +0.1 -0.1 N.D.
nitrogen source L-Glutamine (N); ShewMM media; no shaking N.D. -0.1 -0.0 +0.1 N.D.
nl-ccm; high oxygen NL-CCM; high oxygen N.D. +0.1 +0.1 -0.1 N.D.
nitrogen source L-Glutamine (N); ShewMM media; shaking N.D. +0.1 -0.0 +0.1 N.D.
nitrogen source L-Serine (N); RCH2 media; shaking N.D. +0.1 -0.0 +0.0 N.D.
nitrogen source L-Serine (N); ShewMM media; no shaking N.D. -0.1 +0.1 +0.1 N.D.
nitrogen source Ammonium chloride (N); RCH2 media; no shaking N.D. -0.0 +0.2 +0.0 N.D.
nf_with10percent_fulln NF_with10percent_fullN N.D. +0.1 +0.1 -0.0 N.D.
nf_with_fulln NF_with_fullN N.D. +0.1 +0.1 +0.0 N.D.
nl-ccm; high oxygen NL-CCM; high oxygen N.D. +0.1 +0.1 +0.0 N.D.
nitrogen source L-Glutamine (N); ShewMM media; no shaking N.D. +0.1 +0.0 +0.1 N.D.
nitrogen source Ammonium chloride (N); ShewMM media; shaking N.D. +0.1 +0.1 +0.1 N.D.
nf_with_fulln NF_with_fullN N.D. +0.1 +0.1 +0.1 N.D.
nf_with10percent_fulln NF_with10percent_fullN N.D. +0.1 +0.1 +0.1 N.D.
nl-ccm; high oxygen NL-CCM; high oxygen N.D. +0.1 +0.1 +0.1 N.D.
nf_with10percent_fulln NF_with10percent_fullN N.D. +0.1 +0.2 +0.0 N.D.
nln NLN N.D. +0.1 +0.1 +0.1 N.D.
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