Fitness for 5 genes in Rahnella sp. WP5

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500 ntEX31_RS08500 and EX31_RS08505 are separated by 217 nucleotidesEX31_RS08505 and EX31_RS08510 are separated by 86 nucleotidesEX31_RS08510 and EX31_RS25985 overlap by 11 nucleotidesEX31_RS25985 and EX31_RS08515 are separated by 114 nucleotides EX31_RS08500: EX31_RS08500 - biotin/lipoyl-binding protein, at 204,734 to 205,708 _RS08500 EX31_RS08505: EX31_RS08505 - luciferase-like monooxygenase, at 205,926 to 206,951 _RS08505 EX31_RS08510: EX31_RS08510 - DEAD/DEAH family ATP-dependent RNA helicase, at 207,038 to 208,960 _RS08510 EX31_RS25985: EX31_RS25985 - protein YrbN, at 208,950 to 209,030 _RS25985 EX31_RS08515: EX31_RS08515 - lipoprotein NlpI, at 209,145 to 210,029 _RS08515
Group Condition EX31_RS08500 EX31_RS08505 EX31_RS08510 EX31_RS25985 EX31_RS08515
carbon source D-Glucose (C) +0.1 +0.1 -0.5 -1.2 -1.3
nf_with_fulln NF_with_fullN -0.1 -0.1 -0.4 +0.1 -1.7
nitrogen source Ammonium chloride (N); RCH2 media; no shaking +0.0 -0.0 -0.9 -0.6 -0.6
nitrogen source L-Glutamine (N); ShewMM media; no shaking +0.1 +0.1 -0.3 -1.1 -0.7
nitrogen source L-Glutamine (N); ShewMM media; no shaking +0.1 +0.1 -0.7 -0.9 -0.6
carbon source Sucrose (C) +0.1 -0.0 -0.3 -0.4 -1.2
nitrogen source Ammonium chloride (N); RCH2 media; no shaking -0.1 +0.0 -0.4 -0.7 -0.6
nitrogen source L-Glutamine (N); ShewMM media; shaking +0.0 -0.1 -0.1 -0.8 -0.7
nitrogen source L-Glutamine (N); RCH2 media; no shaking +0.1 +0.0 -0.7 -0.1 -0.9
nitrogen source L-Glutamine (N); RCH2 media; no shaking -0.0 +0.2 -0.8 -0.1 -0.9
nitrogen source Ammonium chloride (N); RCH2 media; no shaking -0.1 +0.1 -0.2 -0.9 -0.5
nf_with_fulln NF_with_fullN -0.1 -0.1 -0.0 +0.3 -1.6
nf_with_fulln NF_with_fullN -0.1 -0.0 -0.3 +0.5 -1.7
nf_with_fulln NF_with_fullN -0.1 -0.0 -0.2 +0.4 -1.7
nf_with_fulln NF_with_fullN -0.1 -0.1 -0.2 +0.6 -1.8
carbon source D-Xylose (C) -0.2 +0.2 -0.6 +0.3 -1.1
nitrogen source Ammonium chloride (N); ShewMM media; shaking +0.0 +0.1 -0.4 -0.5 -0.7
carbon source NLDM_metabolites (C) +0.3 +0.1 -0.7 -0.7 -0.3
nitrogen source L-Glutamine (N); ShewMM media; no shaking +0.0 +0.1 -0.2 -0.6 -0.7
nitrogen source L-Glutamine (N); RCH2 media; no shaking +0.1 +0.1 -0.8 +0.2 -0.9
nitrogen source L-Serine (N); RCH2 media; no shaking -0.0 -0.1 +0.3 -1.1 -0.3
carbon source NLDM_metabolites (C) -0.0 +0.1 -0.7 +0.3 -0.8
carbon source D-Mannitol (C) -0.0 +0.1 -0.2 +0.2 -1.2
nf_with_fulln NF_with_fullN -0.0 -0.1 +0.1 +0.7 -1.6
mixed community NL-CCM; Mixed culture; Sphingobium sp. HT1-2 2:1 starting OD to Azospirillum -0.0 -0.1 -0.2 +0.5 -0.9
carbon source D-Mannitol (C) +0.1 +0.1 -0.3 +0.7 -1.0
nl-ccm; low oxygen NL-CCM; low oxygen -0.2 +0.1 +0.0 +0.6 -0.8
nl-ccm; ambient oxygen NL-CCM; ambient oxygen -0.2 -0.0 +0.6 +0.4 -0.7
nl-ccm; ambient oxygen NL-CCM; ambient oxygen -0.2 -0.1 +0.6 +0.8 -0.6
nl-ccm; ambient oxygen NL-CCM; ambient oxygen -0.2 -0.1 +0.6 +0.6 -0.4
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