Fitness for 5 genes in Rahnella sp. WP5

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500 ntEX31_RS08360 and EX31_RS08365 are separated by 26 nucleotidesEX31_RS08365 and EX31_RS08370 are separated by 301 nucleotidesEX31_RS08370 and EX31_RS08375 are separated by 77 nucleotidesEX31_RS08375 and EX31_RS08380 are separated by 344 nucleotides EX31_RS08360: EX31_RS08360 - Gfo/Idh/MocA family oxidoreductase, at 175,965 to 176,951 _RS08360 EX31_RS08365: EX31_RS08365 - glutamine amidotransferase, at 176,978 to 177,724 _RS08365 EX31_RS08370: EX31_RS08370 - TerC family protein, at 178,026 to 178,997 _RS08370 EX31_RS08375: EX31_RS08375 - magnesium-translocating P-type ATPase, at 179,075 to 181,777 _RS08375 EX31_RS08380: EX31_RS08380 - HTH-type transcriptional regulator TreR, at 182,122 to 183,078 _RS08380
Group Condition EX31_RS08360 EX31_RS08365 EX31_RS08370 EX31_RS08375 EX31_RS08380
nitrogen source L-Serine (N); ShewMM media; shaking -0.0 -0.2 +0.1 -0.2 -0.2
carbon source D-Xylose (C) -0.2 -0.1 +0.1 -0.1 -0.3
carbon source casaminos (C) +0.1 -0.2 -0.2 -0.1 +0.0
nitrogen source L-Glutamine (N); RCH2 media; no shaking +0.0 -0.1 -0.1 -0.4 +0.1
nitrogen source L-Serine (N); RCH2 media; no shaking -0.0 -0.0 +0.1 -0.2 -0.2
nitrogen source L-Glutamine (N); RCH2 media; shaking -0.0 -0.2 +0.2 -0.2 -0.1
nitrogen source Ammonium chloride (N); ShewMM media; no shaking +0.0 -0.1 +0.1 -0.1 -0.2
carbon source NLDM_metabolites (C) -0.3 -0.2 -0.1 +0.1 +0.4
carbon source Sucrose (C) +0.2 -0.3 +0.1 +0.0 -0.1
mixed community NL-CCM; Mixed culture; Sphingobium sp. WW5 2:1 starting OD to Azospirillum +0.2 -0.1 -0.2 +0.1 +0.1
mixed community NL-CCM; Mixed culture; Sphingobium sp. WW5 2:1 starting OD to Azospirillum +0.2 +0.1 -0.2 -0.1 -0.0
nitrogen source Ammonium chloride (N); ShewMM media; no shaking +0.1 +0.1 +0.1 -0.3 -0.1
nitrogen source L-Glutamine (N); ShewMM media; shaking +0.1 -0.0 +0.1 -0.3 +0.2
nl-ccm; ambient oxygen NL-CCM; ambient oxygen -0.0 +0.1 -0.3 +0.0 +0.2
nl-ccm; ambient oxygen NL-CCM; ambient oxygen +0.1 -0.1 -0.2 +0.1 +0.2
nitrogen source Ammonium chloride (N); RCH2 media; shaking +0.2 +0.1 +0.2 -0.2 -0.2
nitrogen source Ammonium chloride (N); RCH2 media; no shaking +0.1 -0.1 +0.2 -0.1 +0.1
nitrogen source Ammonium chloride (N); RCH2 media; shaking +0.1 +0.1 +0.1 -0.2 +0.1
nitrogen source L-Glutamine (N); ShewMM media; shaking +0.1 -0.0 +0.2 -0.2 +0.1
nf_with10percent_fulln NF_with10percent_fullN +0.2 -0.0 -0.3 +0.1 +0.2
nln NLN +0.2 +0.1 -0.2 -0.0 +0.2
nl-ccm_agar NL-CCM_agar +0.1 +0.2 -0.2 +0.1 +0.1
nitrogen source L-Serine (N); RCH2 media; no shaking +0.2 +0.0 +0.2 -0.2 +0.0
carbon source D,L-Lactate (C) -0.1 -0.1 -0.0 +0.0 +0.5
nitrogen source L-Serine (N); RCH2 media; no shaking +0.2 +0.1 +0.2 -0.2 +0.1
nf_with10percent_fulln NF_with10percent_fullN +0.0 +0.1 -0.1 +0.2 +0.4
nf_with_fulln NF_with_fullN +0.0 +0.1 +0.1 -0.0 +0.4
nitrogen source L-Serine (N); ShewMM media; no shaking +0.2 +0.3 +0.1 -0.1 +0.1
mixed community NL-CCM; Mixed culture; Sphingobium sp. HT1-2 2:1 starting OD to Azospirillum -0.0 +0.2 +0.0 +0.0 +0.4
nf_with10percent_fulln NF_with10percent_fullN +0.0 +0.1 +0.1 +0.0 +0.3
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