Fitness for 5 genes in Rahnella sp. WP5

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500 ntEX31_RS08240 and EX31_RS08245 overlap by 27 nucleotidesEX31_RS08245 and EX31_RS08250 are separated by 225 nucleotidesEX31_RS08250 and EX31_RS08255 are separated by 69 nucleotidesEX31_RS08255 and EX31_RS08260 are separated by 112 nucleotides EX31_RS08240: EX31_RS08240 - ATP-binding cassette domain-containing protein, at 140,701 to 141,498 _RS08240 EX31_RS08245: EX31_RS08245 - enterochelin esterase, at 141,472 to 142,815 _RS08245 EX31_RS08250: EX31_RS08250 - TonB-dependent siderophore receptor, at 143,041 to 145,311 _RS08250 EX31_RS08255: EX31_RS08255 - NADP-specific glutamate dehydrogenase, at 145,381 to 146,724 _RS08255 EX31_RS08260: EX31_RS08260 - methylated-DNA--[protein]-cysteine S-methyltransferase, at 146,837 to 147,322 _RS08260
Group Condition EX31_RS08240 EX31_RS08245 EX31_RS08250 EX31_RS08255 EX31_RS08260
carbon source NLDM_metabolites (C) -0.4 +0.2 -0.0 -0.2 -0.8
nf_with_fulln NF_with_fullN -0.2 +0.1 +0.0 -0.1 -0.8
carbon source D-Xylose (C) +0.1 -0.0 +0.1 -0.2 -0.9
carbon source Sucrose (C) +0.1 -0.1 +0.0 -0.2 -0.8
mgl MGL -0.5 +0.0 -0.0 -0.0 -0.5
mgl MGL -0.1 -0.0 -0.1 -0.0 -0.5
nf_with10percent_fulln NF_with10percent_fullN -0.0 -0.1 +0.0 -0.1 -0.6
mixed community NL-CCM; Mixed culture; Sphingobium sp. HT1-2 2:1 starting OD to Azospirillum -0.0 -0.0 +0.0 -0.2 -0.4
nf_with_fulln NF_with_fullN -0.2 +0.1 -0.0 +0.0 -0.5
mixed community NL-CCM; Mixed culture; Sphingobium sp. WW5 2:1 starting OD to Azospirillum -0.4 +0.0 -0.1 +0.1 -0.3
nf_with_fulln NF_with_fullN -0.2 +0.1 -0.0 -0.1 -0.4
nitrogen source Ammonium chloride (N); RCH2 media; shaking -0.2 +0.1 -0.0 -0.1 -0.3
nitrogen source Ammonium chloride (N); RCH2 media; no shaking -0.1 +0.0 +0.1 -0.1 -0.4
nitrogen source Ammonium chloride (N); RCH2 media; shaking +0.2 +0.1 -0.0 -0.4 -0.4
nl-ccm NL-CCM +0.1 +0.1 -0.0 -0.0 -0.4
nf_with10percent_fulln NF_with10percent_fullN -0.2 +0.1 +0.0 -0.1 -0.2
nl-ccm; ambient oxygen NL-CCM; ambient oxygen +0.2 +0.0 -0.1 -0.0 -0.4
mixed community NL-CCM; Mixed culture; Herbiconiux sp. 11RBC 2:1 starting OD to Azospirillum +0.2 -0.0 +0.0 -0.1 -0.3
mixed community NL-CCM; Mixed culture; Sphingobium sp. HT1-2 2:1 starting OD to Azospirillum +0.2 +0.1 -0.0 +0.1 -0.5
nl-ccm; vial NL-CCM; vial +0.1 +0.1 +0.1 +0.1 -0.4
carbon source D-Xylose (C) +0.2 +0.0 +0.1 +0.2 -0.5
nitrogen source L-Serine (N); RCH2 media; shaking -0.3 +0.1 -0.1 -0.1 +0.3
carbon source Sucrose (C) +0.2 +0.1 +0.1 -0.2 -0.1
nitrogen source Ammonium chloride (N); ShewMM media; no shaking +0.1 +0.1 +0.0 -0.3 +0.2
nitrogen source L-Serine (N); ShewMM media; shaking -0.4 -0.0 -0.0 +0.0 +0.6
carbon source D,L-Lactate (C) +0.1 -0.2 -0.1 +0.2 +0.4
mgl MGL -0.1 +0.1 +0.0 -0.0 +0.5
nitrogen source Ammonium chloride (N); ShewMM media; shaking +0.1 +0.1 -0.0 -0.2 +0.7
nitrogen source L-Serine (N); ShewMM media; no shaking +0.1 +0.2 +0.0 +0.1 +0.4
nitrogen source L-Serine (N); RCH2 media; no shaking +0.2 +0.1 -0.1 +0.0 +0.6
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EX31_RS08240
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EX31_RS08260
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