Fitness for 5 genes in Rahnella sp. WP5

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500 ntEX31_RS07925 and EX31_RS07930 overlap by 4 nucleotidesEX31_RS07930 and EX31_RS07935 are separated by 165 nucleotidesEX31_RS07935 and EX31_RS07940 are separated by 86 nucleotidesEX31_RS07940 and EX31_RS07945 are separated by 75 nucleotides EX31_RS07925: EX31_RS07925 - N-acetylmannosamine-6-phosphate 2-epimerase, at 68,370 to 69,068 _RS07925 EX31_RS07930: EX31_RS07930 - PTS transporter subunit EIIC, at 69,065 to 70,618 _RS07930 EX31_RS07935: EX31_RS07935 - MurR/RpiR family transcriptional regulator, at 70,784 to 71,623 _RS07935 EX31_RS07940: EX31_RS07940 - phosphopyruvate hydratase, at 71,710 to 73,014 _RS07940 EX31_RS07945: EX31_RS07945 - CTP synthase (glutamine hydrolyzing), at 73,090 to 74,727 _RS07945
Group Condition EX31_RS07925 EX31_RS07930 EX31_RS07935 EX31_RS07940 EX31_RS07945
carbon source NLDM_metabolites (C) -0.3 -0.3 -0.1 N.D. N.D.
nl-ccm; ambient oxygen NL-CCM; ambient oxygen -0.1 -0.1 -0.0 N.D. N.D.
nl-ccm; ambient oxygen NL-CCM; ambient oxygen -0.2 -0.1 +0.1 N.D. N.D.
mgl MGL -0.1 +0.0 -0.2 N.D. N.D.
carbon source D-Mannitol (C) -0.1 +0.0 -0.2 N.D. N.D.
nln NLN -0.1 -0.1 +0.1 N.D. N.D.
nl-ccm; high oxygen NL-CCM; high oxygen -0.2 -0.1 +0.2 N.D. N.D.
nitrogen source Ammonium chloride (N); ShewMM media; shaking +0.0 +0.1 -0.3 N.D. N.D.
carbon source Sucrose (C) -0.2 +0.1 -0.1 N.D. N.D.
mixed community NL-CCM; Mixed culture; Sphingobium sp. WW5 2:1 starting OD to Azospirillum -0.3 -0.0 +0.2 N.D. N.D.
nitrogen source Ammonium chloride (N); RCH2 media; no shaking +0.1 +0.1 -0.3 N.D. N.D.
nl-ccm; ambient oxygen NL-CCM; ambient oxygen -0.1 -0.1 +0.2 N.D. N.D.
nl-ccm_agar NL-CCM_agar -0.1 -0.0 +0.1 N.D. N.D.
nl-ccm; ambient oxygen NL-CCM; ambient oxygen -0.0 -0.2 +0.1 N.D. N.D.
mgl MGL -0.2 -0.0 +0.2 N.D. N.D.
mixed community NL-CCM; Mixed culture; Sphingobium sp. HT1-2 2:1 starting OD to Azospirillum -0.1 -0.0 +0.2 N.D. N.D.
nitrogen source L-Serine (N); RCH2 media; shaking +0.1 +0.2 -0.2 N.D. N.D.
carbon source NLDM_metabolites (C) -0.1 +0.0 +0.2 N.D. N.D.
nf_with10percent_fulln NF_with10percent_fullN -0.0 -0.1 +0.2 N.D. N.D.
nl-ccm_agar NL-CCM_agar -0.1 +0.0 +0.2 N.D. N.D.
nitrogen source Ammonium chloride (N); ShewMM media; shaking +0.2 +0.2 -0.0 N.D. N.D.
nitrogen source L-Glutamine (N); ShewMM media; shaking +0.2 +0.1 +0.0 N.D. N.D.
carbon source D,L-Lactate (C) +0.0 +0.0 +0.3 N.D. N.D.
nitrogen source L-Serine (N); RCH2 media; no shaking +0.1 +0.1 +0.1 N.D. N.D.
nitrogen source L-Glutamine (N); ShewMM media; no shaking +0.1 +0.2 +0.1 N.D. N.D.
nitrogen source Ammonium chloride (N); ShewMM media; no shaking +0.2 +0.2 -0.0 N.D. N.D.
nitrogen source L-Serine (N); ShewMM media; no shaking +0.2 +0.2 -0.0 N.D. N.D.
nitrogen source L-Serine (N); ShewMM media; shaking +0.3 +0.1 +0.1 N.D. N.D.
carbon source D,L-Lactate (C) +0.1 +0.0 +0.4 N.D. N.D.
nitrogen source L-Serine (N); RCH2 media; no shaking +0.3 +0.2 +0.1 N.D. N.D.
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EX31_RS07925
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EX31_RS07930
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EX31_RS07940
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EX31_RS07945
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